Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2656 109 6e-19 seq621 109 6e-19 seq1453 107 2e-18 seq2325 105 8e-18 seq2374 100 3e-16 seq1561 96.9 4e-15 seq2845 95.1 1e-14 seq1055 95.1 1e-14 seq7885 86.0 7e-12 >seq2656 Length=1073256 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 575248 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 575189 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 575188 CTATACTACCGAGGA 575174 >seq621 Length=3205890 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60056 GAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 3162353 GAAAAATAATCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3162294 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 3162293 TACTAACCACTATACTACCGAGGA 3162270 >seq1453 Length=2861619 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1712041 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1712100 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 1712101 TACTACCGAGGATT 1712114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1711131 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1711190 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 1711191 TACTAACGAGGATT 1711204 >seq2325 Length=1829695 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1555526 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1555585 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 1555586 ATACTACCGAGGA 1555598 >seq2374 Length=1634490 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 60057 AAAAAT---TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| ||||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 841167 AAAAATATATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 841108 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 841107 TACTAACCACTATACTAACGAGGA 841084 >seq1561 Length=5220439 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 23944 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 24003 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 24004 TAACCACTATACTATCGAGGA 24024 >seq2845 Length=97856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 77077 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 77136 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 77137 TACTATCGAGGA 77148 >seq1055 Length=2524637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2116589 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2116530 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2116529 TACTATCGAGGA 2116518 >seq7885 Length=810 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| ||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 65 TCCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGA 124 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| |||||||| || || | || |||||| || | || Sbjct 125 AAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGG 184 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||| | | ||| |||| |||| | | | | | || || | ||| | Sbjct 185 AATACCTTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAA 243 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || ||||| || || || || |||||||| |||||||| Sbjct 244 CTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571760804216880