Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2024 123 2e-23 >seq2024 Length=8919894 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||||||| |||||||| || |||| |||||| | ||| || ||||||||||| ||| Sbjct 2396315 AAATGTAAGTCCTGGCATAAGACCTCTTTTTTTTAACCAGAAAATAGCGGCAAAACTACC 2396374 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt 16404 | |||||| |||||||| ||||| ||||| ||||||| || ||| | || | | Sbjct 2396375 ACTAAAGAAAATACCTTCTACTGCAGCAAAAGCAACCACACGTTCAGGAAAAGTGGCACT 2396434 Query 16405 tttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC 16464 || | | |||||| ||| ||||||| ||||||| | |||||| || || || Sbjct 2396435 TTCATGATTTATCCAATTTAACGCCCAATGAGCTTTTTTTGCAACACATGGCAAATTTTC 2396494 Query 16465 TATTGCATTAAATAAA 16480 || |||||||||||| Sbjct 2396495 GATAGCATTAAATAAA 2396510 Score = 109 bits (120), Expect = 5e-19 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 || || ||||| | | ||||||||| || |||||||| ||||| || ||| | | | Sbjct 2395969 CAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTA 2396028 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 |||||||| ||||| | || |||||| | ||| ||||||||||| | || ||| || ||| Sbjct 2396029 CAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTA 2396088 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT----TAATAAGTG 16221 || || || | || || | | ||| || | || |||| || | ||| Sbjct 2396089 ACAGCATCCTTAATAATTGATGTAACT----CGTTCACAAGATGGTTTTTGTACAATGTG 2396144 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 ||| ||||||| ||| |||||||||||||| ||||| Sbjct 2396145 TTTGAACATTAAACATGCAAAATCACAATGTAATCC 2396180 Score = 107 bits (118), Expect = 2e-18 Identities = 149/201 (74%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 16492 TTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551 ||||| |||| ||| || ||||| |||| ||| ||||||||||||||||| ||| || Sbjct 2396599 TTTGC-ATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTC 2396657 Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAA 16610 ||| || | ||||||||||| || || | || || | |||||||||||| || | || Sbjct 2396658 CATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT-AA 2396716 Query 16611 ACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC-AAG-TAT 16668 | | ||| | | || || || || |||||||| ||||||||||| || ||| || Sbjct 2396717 ATCGTTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACAT 2396776 Query 16669 GTGTTTAATAAAAtttttttC 16689 | | | ||||||| |||||| Sbjct 2396777 GAGAT--ATAAAATGTTTTTC 2396795 Score = 89.7 bits (98), Expect = 5e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTT-CAAAGAAATTTGTTTTTCCTTCTAATGAAATAT 16001 |||||||||||| | ||| | |||| ||||||| ||||| || |||||||| ||||||| Sbjct 2395762 TTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATAT 2395821 Query 16002 TTTCCATAAAATCAAAAGGATTTT 16025 |||||| |||||||| ||||||| Sbjct 2395822 GTTCCATGAAATCAAACGGATTTT 2395845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462466060995600