Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq1563 141 2e-29 >seq1563 Length=10698 Score = 141 bits (156), Expect = 2e-29 Identities = 447/677 (66%), Gaps = 32/677 (5%) Strand=Plus/Plus Query 19128 GACTATTCAATGATGTCAGATAATACAGCGATTGCTTTCGTTTTTCCTTATTTAGATGAT 19187 || ||||||||| | || || ||||||||||||| ||| |||| ||| ||| | |||| Sbjct 3018 GATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAAATGAA 3077 Query 19188 GAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCGTTTGTTCCATTCCAAAGAGCAGGT 19247 ||||| |||| |||||| ||| || || ||| |||| | ||| ||| || Sbjct 3078 GAAGGGCAGCCACGATGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAAGCCGGA 3137 Query 19248 TCAATTGATGCTAAAGAAAAACAAGATGGTATTAATTATAGAGAACTAGAAAAATATGGT 19307 || |||| ||||||||||| |||||||||||| |||| | || || Sbjct 3138 TCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTAT------CATGAGTTTCCTGAG 3191 Query 19308 TTTTGTACAGTCACAAGCCACCAACAAGGGCTAATCAATGATGATGAGGTCTATGAATGG 19367 ||||||||| |||| || || |||| | || ||| || | || ||| ||||| Sbjct 3192 TTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTTATAAATGG 3251 Query 19368 ATTGTAAACTATATTGAAGATAACGCATTGGATGTTATCTTTTTTGGTTACGA-TGCAAT 19426 || || ||||| ||||||| || || | || || || ||||| || || | | Sbjct 3252 CTTTTAGACTATGTTGAAGAACACAATTTAAAGGTCATTTTCTTTGGATATGACCGTTTT 3311 Query 19427 G---GGTATCA-CTAAAGTA-ATT--CAAATGCTCATGAAT---AATAC-GGGCTATAAT 19475 | | ||||| ||||| | ||| || ||| | ||| ||||| || |||| Sbjct 3312 GGCAGTTATCAGGTAAAGAATATTACTGAAAGCT--TAAATGCCAATACAGGTGGTTAAT 3369 Query 19476 TTACAACCTATCCGTCAAAGAACGAGTGAG-TTGAAAGATCCTACAAAATTTTTACAAAA 19534 | | || || | ||||| || || ||| ||| | ||||||| |||||||| ||| | Sbjct 3370 TCAAGACATAGC--ACAAAGGACAAGCGAGCTTGCCA-ATCCTACTAAATTTTTGCAAGA 3426 Query 19535 ACTATTTG-TAGAGGGATCTATTAGTAGGCTAGATGATAAAATCATGGAAAAATCGCTAT 19593 | |||| || |||| |||| || | | ||| || | |||||| | | Sbjct 3427 AAGCTTTGCTACCGGGA-AAATTACCCGGTTCAACGATCCGATTTTAGAAAAAGCATTGC 3485 Query 19594 TAAATGCGGTTTTACGTGAAGATTCAATAGGAATACAGGTAGATAAACGAAAAGCAACTT 19653 | ||||| | | |||||| ||| || ||||| || || || ||||| ||| Sbjct 3486 TTAATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAAGCTACTC 3545 Query 19654 TAAAAATTGACGTTGTTGATGCGATTATTGATGCTTTATTTCAAGGGATGTATCACTTTG 19713 |||||||||| || |||||||| | |||||||| | | |||||||||| | || |||| Sbjct 3546 TAAAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAACCATTTTG 3605 Query 19714 AGGATTATGGTATGGCAAATGATAA---GAGTTGGAAAGTTGAGCATATGACACCAGAAC 19770 | | ||||| || || ||||| || | |||| || | |||||| | ||||| Sbjct 3606 AAAAGTATGGAATTATCAACGATAAATCGACT---GAAGTAGAACGTATGACGCAAGAAC 3662 Query 19771 AAGTAAAAGAATGGGTT 19787 | || || |||| || Sbjct 3663 AGGTTCTAGCATGGTTT 3679 Score = 134 bits (148), Expect = 4e-27 Identities = 452/695 (65%), Gaps = 29/695 (4%) Strand=Plus/Plus Query 22429 TGTTGAGAGTGTTTCTACTTCAAACGGTAGTCGTGTATATGAAAAATGGACTGATGTAAC 22488 |||||| ||||| |||||| | | ||| | | || ||||||||| | ||| | || Sbjct 6195 TGTTGAAAGTGTGTCTACTGCTCATGGTTCTAGAGTTTATGAAAAACTAGCAGATATTAC 6254 Query 22489 TCCGTTGACTGTAA---TGGATGCAGAAGATGGAAAAATTCCAGACCTTGACAATCCTCA 22545 || || ||| | |||||| ||| | | ||||| || |||| ||||| | Sbjct 6255 ACCATT---TGTTAACCTGGATGATGAAAAAGCTCAAATTGGTGATATTGATGATCCTAA 6311 Query 22546 GTTGACAATTATCAAATACTTGATTAAACGTTATGCGGGAATCATCACTGCAACGAATAC 22605 ||| || | || || | ||| | ||||| || || || | || | || ||||| Sbjct 6312 GTTAACTCTGATTAAGTTTGCGATCCATCGTTACGCTGGCATTACTACCGTTACTAATAC 6371 Query 22606 ATCACTTAAAGATACAGCAGAAAATATTCTTGCATGGTT--ATCAAGCTGGATTGCTAAG 22663 | | ||||| |||||||||||||||| ||||| | ||| ||| || Sbjct 6372 ACTTTTGGCTGATACGGCAGAAAATATTCTTGGCTGGTTGCAACAA--TGGGCAGCACGC 6429 Query 22664 AAAGTGGTTGTGACTCGTAACCAAGCGATTATCGAAGTAATGAAAGCAGCACCTAAAAAA 22723 || | |||||||||||||| ||||| ||| | | || ||| ||||||| || Sbjct 6430 AAGGATGTTGTGACTCGTAATCAAGCTATTCTGGCTGTTATGGGCACAGCACCAGCTAAG 6489 Query 22724 CCAACAATCGCTAAATTTGACGATGTTATTACTATGATTAATACAGCGGTTGATCCTGCG 22783 || || || |||| ||||| ||| ||| || |||| || ||||||| || Sbjct 6490 CCTACTATTACTAACTTTGATGATATTAAGGACCTGCAAAATAATACGCTTGATCCAGCA 6549 Query 22784 ATTATCGCCACTTCAAGTCTTTTGACTAACCAGTCAGGGTTGAATAAACTTGCTTTGGTT 22843 |||||||| |||||||| | | |||||||| || || || ||| || || | Sbjct 6550 ATTATCGCAACTTCAAGCTATGTTACTAACCAATCTGGTTTTAATGTTCTATCTAAAATG 6609 Query 22844 AAAACTGCTGAAGGTAAATATTTGCTCGAACCAGACCCAACAAAACCT-AATTCATATCT 22902 ||| ||| || ||| ||||| | |||| | ||| || ||| || | | | Sbjct 6610 AAAGATGCAGATGGTCGTTATTTAATTCAACCTAATGTAACTAATCCTGAAGTTAAAGAG 6669 Query 22903 AATTAAAGGTAAACA---AGTTATTGTTGTTGCAGATCGCTGGCTTCCAAATACT---GG 22956 | | ||| ||| |||| ||| | | ||| ||| | ||| || | || Sbjct 6670 ATT----GGTGGACATGCAGTTCAAGTTATCGGTGATAAGTGGTTACCAGATGTTTCAGG 6725 Query 22957 ATCAACAGTTTATCCACTTTACTATGGAGATATGTCGCAAGCTATTACATTGTTTGACCG 23016 |||| |||| ||||||| || || | ||||| |||||| || | |||||| Sbjct 6726 ATCAC------ATCCGCTTTACTTCGGTGACCTAAAGCAAGGTATTACTTTATATGACCG 6779 Query 23017 TGAAAACATGTCA-TTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTA 23075 | ||| ||||| ||||| |||||||| ||||| | ||| ||||||||||||||||| | Sbjct 6780 TCAAAGAATGTCTGTTACT-CCAACAAACATTGGAGGTGGAGCATTTGAAACTGATACAA 6838 Query 23076 CTAAAATTCGTGTAATCGATCGCTTCGATGTTAAA 23110 |||| || || | || ||||| || || ||| || Sbjct 6839 CTAAGATCCGCTTTATTGATCGGTTTGACGTTGAA 6873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133734579781392