Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1883 150 1e-31 >seq1883 Length=454209 Score = 150 bits (166), Expect = 1e-31 Identities = 215/298 (72%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||||||||||| ||||| |||||||||||||| || || ||||| |||||||| Sbjct 61046 ATTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAAGAATTATTATG 61105 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAG 20162 ||| ||||| ||||| |||||| ||| | | ||||| | ||| | |||||| Sbjct 61106 GTTCATTAATGGATCCACAAATGCTAAAAAATTAAGCGAAAAGGATGTTCATATTTGGGA 61165 Query 20163 CGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGG 20221 || || | || | || ||| | ||| ||| ||| | | |||| || | Sbjct 61166 TGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGG-TTTTACAGATAGGGAAGAAGGAG 61224 Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| |||||| | |||||||||||||||||||||||||| || |||| || ||| Sbjct 61225 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATATGT 61284 Query 20282 ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTA-TTAATTTAATTA 20338 ||| | ||||| |||| ||| ||| | |||| | ||| ||| | |||||||||| Sbjct 61285 ACAAAGATTATAATGGAGAAG--GTAAAACAATAATTTAATATTACTAAATTTAATTA 61340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || || || ||||||||||| | || ||||| | | ||| | || ||||||| Sbjct 61432 CCCAATGATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCT 61491 Query 20407 TTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCA 20465 || ||||| |||||| || | || |||||||| || ||| | ||||| || || || Sbjct 61492 TTACCTCCTTGTCAT-TGTTTTGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCA 61550 Query 20466 AATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGC 20525 | | |||||| || || |||||||| || ||||| || || ||||||||| |||| | Sbjct 61551 ACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTC 61610 Query 20526 GCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 | | | |||||| | |||||| ||||| | || || Sbjct 61611 TTTATTAATTTATATGCTGGCACATATTACAAACTTGAA 61649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399145342272970