Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_002796.1 Length=40003 Score E Sequences producing significant alignments: (Bits) Value seq1563 152 1e-32 >seq1563 Length=10698 Score = 152 bits (168), Expect = 1e-32 Identities = 504/775 (65%), Gaps = 23/775 (3%) Strand=Plus/Plus Query 5000 GCTGGACTTACTATTCCGCAAGATATCCGTACTATGATTAACACATTGGTTCGCCAATAT 5059 |||||||| |||||||| ||| | | ||| || | || | || | |||||| Sbjct 6112 GCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGTAAGACAATAT 6171 Query 5060 GACTCACTACAACAATATGTACGTGTTGAGAGTGTTTCTACTTCAAACGGTAGTCGTGTA 5119 ||| || || | ||| |||||| ||||| |||||| | | ||| | | || Sbjct 6172 TCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCATGGTTCTAGAGTT 6231 Query 5120 TATGAAAAATGGACTGATGTAACTCCGTTGACTGTAA---TGGATGCAGAAGATGGAAAA 5176 ||||||||| | ||| | || || || ||| | |||||| ||| | | || Sbjct 6232 TATGAAAAACTAGCAGATATTACACCATT---TGTTAACCTGGATGATGAAAAAGCTCAA 6288 Query 5177 ATTCCTGATCTTGATAATCCACGTTTGACAATTATTAAATACTTGATTAAACGTTATGCG 5236 ||| |||| ||||| |||| || || | ||||| | ||| | ||||| || Sbjct 6289 ATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATCGTTACGCT 6348 Query 5237 GGAATCATCACTGCAACTAATACATTGCTTAAAGATACAGCAGAAAATATTCTTGCATGG 5296 || || | || | ||||||||| | | ||||| |||||||||||||||| ||| Sbjct 6349 GGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTCTTGGCTGG 6408 Query 5297 TT--ATCAAGCTGGATTGCTAAGAAAGTGGTTGTGACTCGTAACCAAGCGATTATTGCAG 5354 || | ||| ||| || || | |||||||||||||| ||||| ||| | || | Sbjct 6409 TTGCAACAA--TGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTCTGGCTG 6466 Query 5355 CAATGGGTACAGTTCCTAAAAAACCAACAATCGCTAAATTTGATGATGTTATTACTATGA 5414 ||||| |||| || || || || || |||| ||||||||| ||| || Sbjct 6467 TTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGGACCTGC 6526 Query 5415 TTAATACATCTGTTGATCCTGCGATTATCGCCACTTCAAGTCTTTTGACTAACCAGTCAG 5474 |||| | ||||||| || |||||||| |||||||| | | |||||||| || | Sbjct 6527 AAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACCAATCTG 6586 Query 5475 GGTTGAATAAACTTGCTTTGGTTAAAACTGCTGAAGGTAAATATTTGCTCGAACCAGACC 5534 | || ||| || || | ||| ||| || ||| ||||| | |||| | Sbjct 6587 GTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAACCTAATG 6646 Query 5535 CAACAAAACCT-AATTCATATCTAATTAAAGGTAAAAAAGTTATTGTTGTTGCAGATCGC 5593 ||| || ||| || | | | ||| || | |||| ||| | | ||| Sbjct 6647 TAACTAATCCTGAAGTTA-AAGAGATTGGTGGACATGCAGTTCAAGTTATCGGTGATAAG 6705 Query 5594 TGGCTTCCAAATAGT---GGATCAACAGTTTATCCACTTTACTATGGAGATATGTCGCAA 5650 ||| | ||| || | |||||| |||| ||||||| || || | |||| Sbjct 6706 TGGTTACCAGATGTTTCAGGATCA------CATCCGCTTTACTTCGGTGACCTAAAGCAA 6759 Query 5651 GCTATTACATTGTTTGACCGTGAAAACATGTC-ATTACTTCCAACAAATATTGGTGCTGG 5709 | |||||| || | ||||||| ||| ||||| |||| ||||||||| ||||| | ||| Sbjct 6760 GGTATTACTTTATATGACCGTCAAAGAATGTCTGTTAC-TCCAACAAACATTGGAGGTGG 6818 Query 5710 TGCATTTGAAACTGATACTACTAAAATTCGTGTAATCGATCGCTTCGATGTTAAA 5764 ||||||||||||||||| ||||| || || | || ||||| || || ||| || Sbjct 6819 AGCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTGAA 6873 Score = 138 bits (152), Expect = 3e-28 Identities = 407/613 (66%), Gaps = 26/613 (4%) Strand=Plus/Plus Query 1776 GACTATTCAATGATGTCAGATAATACAGCGATTGCTTTCGTTTTTCCTTATTTAGATGAT 1835 || ||||||||| | || || ||||||||||||| ||| |||| ||| ||| | |||| Sbjct 3018 GATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATCAAAATGAA 3077 Query 1836 GAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCGTTTGTTCCATTCCAAAGAGCAGGT 1895 ||||| |||| |||||| ||| || || ||| |||| | ||| ||| || Sbjct 3078 GAAGGGCAGCCACGATGGCATATTGCTCAACACAGTTTTATTCCGTGGCAACAAGCCGGA 3137 Query 1896 TCAATTGATGCTAAAGAAAAACAAGATGGTATTAATTATAGAGAACTAGAAAAATATGGT 1955 || |||| ||||||||||| |||||||||||| |||| | || || Sbjct 3138 TCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTAT------CATGAGTTTCCTGAG 3191 Query 1956 TTTTGTACAGTCACAAGCCACCAACAAGGGCTAATCAATGATGATGAGGTCTATGAATGG 2015 ||||||||| |||| || || |||| | || ||| || | || ||| ||||| Sbjct 3192 TTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTTATAAATGG 3251 Query 2016 ATTGTAAACTATATTGAAGATAACGCATTGGATGTTATCTTTTTTGGTTACGA-TGCAAT 2074 || || ||||| ||||||| || || | || || || ||||| || || | | Sbjct 3252 CTTTTAGACTATGTTGAAGAACACAATTTAAAGGTCATTTTCTTTGGATATGACCGTTTT 3311 Query 2075 G---GGTATCA-CTAAAGTA-ATT--CAAATGCTCATGAAT---AATAC-GGGCTATAAT 2123 | | ||||| ||||| | ||| || ||| | ||| ||||| || |||| Sbjct 3312 GGCAGTTATCAGGTAAAGAATATTACTGAAAGCT--TAAATGCCAATACAGGTGGTTAAT 3369 Query 2124 TTACAACCTATCCGTCAAAGAACGAGTGAG-TTGAAAGATCCTACAAAATTTTTACAAAA 2182 | | || || | ||||| || || ||| ||| | ||||||| |||||||| ||| | Sbjct 3370 TCAAGACATAGC--ACAAAGGACAAGCGAGCTTGCCA-ATCCTACTAAATTTTTGCAAGA 3426 Query 2183 ACTATTTG-TAGAGGGATCTATTAGTAGGCTAGATGATAAAATCATGGAAAAATCGCTAT 2241 | |||| || |||| |||| || | | ||| || | |||||| | | Sbjct 3427 AAGCTTTGCTACCGGGA-AAATTACCCGGTTCAACGATCCGATTTTAGAAAAAGCATTGC 3485 Query 2242 TAAATGCGGTTTTACGTGAAGATTCAATAGGAATACAGGTAGATAAACGAAAAGCAACTT 2301 | ||||| | | |||||| ||| || ||||| || || || ||||| ||| Sbjct 3486 TTAATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAAGCTACTC 3545 Query 2302 TAAAAATTGACGTTGTTGATGCGATTATTGATGCTTTATTTCAAGGGATGTATCACTTTG 2361 |||||||||| || |||||||| | |||||||| | | |||||||||| | || |||| Sbjct 3546 TAAAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAACCATTTTG 3605 Query 2362 AGGATTATGGTAT 2374 | | ||||| || Sbjct 3606 AAAAGTATGGAAT 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127875932648180