Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2024 116 4e-21 >seq2024 Length=8919894 Score = 116 bits (128), Expect = 4e-21 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || || | |||||||| ||||| ||||||||||| |||| || || ||||||||| || Sbjct 2395960 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 2396019 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 2396020 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 2396079 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT 14185 || || ||||| || | ||||||| | ||| | | | ||| || | || | Sbjct 2396080 TCAATTTTAACAGCATCCT---TAATAATTGATGTAACTCGTTCACAAGATGGTTTTTGT 2396136 Query 14186 AGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2396137 ACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| |||||| || || |||||| | ||||||||| | |||| ||||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||||||| || || || || || || |||||| || || || ||||||||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449 ||||||| || | | || |||| ||||||||||||||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAA 2396510 Score = 100 bits (110), Expect = 3e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 14459 TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTT 14518 ||||| | | || |||||| |||||||| | || ||||||||| || || | ||| Sbjct 2396596 TCTTTTGCATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTT 2396655 Query 14519 TCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAGTA 14577 ||||| || | ||||||||||| ||||| | || |||| |||||| || ||| | Sbjct 2396656 TCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT- 2396714 Query 14578 AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14634 ||||| ||| | | ||| ||||| || || |||||| |||||||||||||| || Sbjct 2396715 AAATCGTTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAA 2396771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTT-TTCAAAGAAGTTAGTTTTACCTTC 13959 || || ||| |||||||||||| | ||| |||| |||||||||||| || |||||||| Sbjct 2395751 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2395810 Query 13960 CAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATA 14002 | || |||| |||||| |||||||| |||||| |||||| Sbjct 2395811 TAAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 2395853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 14693 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACC 14752 ||||||||||||||||| || |||||||||||| || |||||||||| |||||| | Sbjct 2396900 TTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTTGC 2396959 Query 14753 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || || || || ||||||||||| |||||||| Sbjct 2396960 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 2396997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482297691023280