Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq317 104 3e-17 seq1883 87.8 2e-12 seq2691 84.2 3e-11 >seq317 Length=4095164 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 19429 AAAAATATATCTAGGACTTGCTGCATCTTTTCCTCCAGAAAGTCTCGTGCCAAATTGGCC 19488 ||||||||||| |||||| ||||||||||||||||| | |||||| || |||||||| || Sbjct 4026536 AAAAATATATCGAGGACTCGCTGCATCTTTTCCTCCTGCAAGTCTTGTACCAAATTGACC 4026477 Query 19489 ATCCTCTTCTAAAAGAGGTATGTTATTGGCTCCAACAAAAGTTTGTGCCATTTTAATGAT 19548 | || | | | ||||||||| ||| || ||| ||||||| | ||||| || Sbjct 4026476 AATTGGTTGAAGTAAATTTATGTTATTACTTCCTACGAAATTTTGTGCAAGATTAATAAT 4026417 Query 19549 AG-TGTCAAATAGATTTTGTTCTCCATGTTTATAATCTGTTTTTTGTGCTACGAAAGCTC 19607 || || || | ||| ||||||||| | ||| ||| | || ||||| || | Sbjct 4026416 AGTTGACATA-AGAGAAACTTCTCCATGATGATATGCTGAATGTTCAGCTACAGAACCAG 4026358 Query 19608 CTAATTGGGCAACTTT 19623 | ||||| |||||||| Sbjct 4026357 CCAATTGTGCAACTTT 4026342 >seq1883 Length=454209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/196 (69%), Gaps = 15/196 (8%) Strand=Plus/Plus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||||||||||| ||| | ||| ||||| |||| |||| | | |||||||| | ||| Sbjct 61438 GATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCT 61497 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 |||||||||||| | | || ||| ||||||| |||| |||||| Sbjct 61498 CCTTGTCATTGTTTTGTTCAATTTTATGTAAG---------CAATG------AAGAATTA 61542 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 || || || | | ||||||| ||| |||||||| | || || || ||||| || ||| Sbjct 61543 TCATGCCAACTTTATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCA 61602 Query 104710 AGTTATGCATTATTAA 104725 |||| | ||||||| Sbjct 61603 TCTTATTCTTTATTAA 61618 >seq2691 Length=2742322 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/177 (72%), Gaps = 14/177 (8%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCA--ATGATGGC 73987 |||| ||| || || | | ||| ||||||| || ||||||||| || | ||||||| Sbjct 2709265 ATGGCGATTTAGTAATTTTCAATCGACAACCGACATTACATAAA--ATGAGTATGATGGG 2709208 Query 73988 TCTTCGAGTTAAAATT-----ATGGATGTAAAAACCTTTAAATTTAATCTTGCATGCACT 74042 || | |||| ||| || ||||| ||| | ||| | |||||| ||||| Sbjct 2709207 TCATAGAGTAAAAGTTTTACCATGGA-GTACA----TTTCGTATGAATCTTAGTTGCACA 2709153 Query 74043 AAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCA 74099 |||||||||||| ||||| ||||| |||||||||||| ||||| || |||||| Sbjct 2709152 TCACCATATAATGCCGATTTCGATGGTGATGAAATGAATTTACATGCCCCACAATCA 2709096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679746877434720