Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7885 100 2e-16 seq3153 95.1 9e-15 seq878 93.3 3e-14 seq2112 91.5 1e-13 seq1955 86.0 5e-12 >seq7885 Length=810 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | ||||| ||||||||||| || ||||| || || | Sbjct 294 CCACCACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAA 353 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||| |||||||| || ||| |||| ||||| |||||||| || Sbjct 354 AGTGTACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGA 413 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| ||| || | | ||| ||| || | || Sbjct 414 ATACCTTCCTTATCTTGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACC 473 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| |||| || || | ||||| || ||||||||||| Sbjct 474 TCCAGAGTGATGGTTTT-CCCGTAAGAGTTTTAACGAAAATTTGCAT 519 >seq3153 Length=1268 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| | ||| | || ||||| ||||||||||| || ||||| || | Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||| | |||||| || ||| |||| | || ||||||||| || Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| |||| ||| || | | | ||| || | || | Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| |||| || || | ||||| |||||||| ||||| Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq878 Length=1131996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || | |||||| ||||||||||| || || || | || ||| | |||| Sbjct 558630 AGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCT 558571 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || ||| |||| | |||||| ||||| || | ||||||||||| Sbjct 558570 TCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCT 558511 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||| || || | | ||| || || || ||| || | || || | Sbjct 558510 TGAATTT-TTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGT 558452 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || ||||||||||| ||||| || ||||| Sbjct 558451 TTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq2112 Length=2858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | |||||| || |||||||||||||| || || |||| Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| |||||||| || ||| |||| | ||| ||||| || || Sbjct 331 AGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 272 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| |||| || || | | ||| || || | || Sbjct 271 ATACCTTCCTTGTCTTGAATTT-TTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAAC 213 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| || || |||| || || | || || || |||||||||||| Sbjct 212 TTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 >seq1955 Length=5322578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| ||||| | ||||| || ||||| ||||||||||| || ||||| || Sbjct 1860573 TCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 1860632 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | |||||| | ||||||||| ||| | || | || ||| ||||| || Sbjct 1860633 AAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 18218 CACGCCTTCCTTATC 18232 | ||||| ||||| Sbjct 1860693 AATTCCTTCTTTATC 1860707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||||||| |||| | ||||| ||||| || || ||||||||||| ||||| || | Sbjct 1861028 TCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGA 1861087 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| | |||||||| ||| | || | | ||| ||||| || Sbjct 1861088 AAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGG 1861147 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| ||| | | || || || | | | | ||||| | || Sbjct 1861148 AATTCCTTCTTTATCTTGAATCT-TAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAA 1861206 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||||| |||| || || | ||||| ||||| ||||||||| Sbjct 1861207 CTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379307263615770