Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3153 96.9 3e-15 seq1955 96.9 3e-15 >seq3153 Length=1268 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 ||||||||||| |||||||||||| |||| || ||||| || || | || || ||| | Sbjct 966 ATCATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCT 1025 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | |||| | ||| |||| ||||| | |||||||| | || || Sbjct 1026 TCAGATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGAT 1085 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||||| || || | ||| || |||||||| |||||| | || | |||||| Sbjct 1086 CAACAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTAC 1145 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | || || ||||| | || || |||||||| ||| || | || |||||| Sbjct 1146 AATATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGGT 1196 >seq1955 Length=5322578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||| || ||||| || ||||| || ||| | || || ||| | Sbjct 1861937 ATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCTTCA 1861878 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| |||| || ||| | |||||||| | || || || Sbjct 1861877 GACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAA 1861818 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||||| || | ||| ||||||||||| |||||| | | ||| | | ||||| | Sbjct 1861817 CAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCA--GATTATA 1861760 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 || ||||||||| | || |||||| |||| || Sbjct 1861759 ATATTCAGAAAGAGTCTACTCTTCATCTAGTATT 1861726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||| || ||||| || ||||| || ||| | || || ||| | Sbjct 1864577 ATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCTTCA 1864518 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| |||| || ||| | |||||||| | || || || Sbjct 1864517 GACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAA 1864458 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||||| || | ||| ||||||||||| |||||| | | ||| | | ||||| | Sbjct 1864457 CAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCA--GATTATA 1864400 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 || ||||||||| | || |||||| |||| || Sbjct 1864399 ATATTCAGAAAGAGTCTACTCTTCATCTAGTATT 1864366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||||||||| | || || || || || || | || || ||| | Sbjct 1861027 ATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCG 1860968 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||| | ||| |||| || ||| | | ||||||| | ||| |||||| Sbjct 1860967 GATACAATAGAGAATGTAAAGGCTAAGATT-CAAGATAAGAAGGAATTCCGCCTGACCAA 1860909 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| |||||||| || |||||| | ||| | ||||| | Sbjct 1860908 CAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTCTCAGATTATAAT 1860849 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| | || |||||| | || || ||| | || ||||| Sbjct 1860848 ATTCAGAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGAGGAGG 1860802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || || | || || ||| | Sbjct 1861255 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCA 1861196 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| ||| || | || ||| | |||||||| | || ||| ||| Sbjct 1861195 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAG 1861136 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| |||||||| || |||||| | ||| | ||||||| Sbjct 1861135 CAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAAT 1861076 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || |||||| | || |||||| | || || ||| | || ||||| Sbjct 1861075 ATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGG 1861029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || || | || || ||| | Sbjct 1861709 ATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTCA 1861650 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| ||| |||| || ||| | |||||||| | || ||||||| Sbjct 1861649 GACACAATAGAAAATGTAAAGGCTAAGATTCAAGACAAAGAAGGAATTCCCCCTGACCAG 1861590 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || |||||| | |||||| | ||| | ||||| | Sbjct 1861589 CAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATAAT 1861530 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || || || | || || |||||||| || || | || |||||| Sbjct 1861529 ATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGGT 1861482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418263490656320