Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2024 129 5e-25 seq2112 127 2e-24 seq7885 111 1e-19 seq1955 107 2e-18 seq1429 82.4 7e-11 >seq2024 Length=8919894 Score = 129 bits (142), Expect = 5e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||| | | ||||||| || || || || ||||| || ||||| ||||| ||||| || Sbjct 2396796 TGAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCATCTGATGGAATTGTCAA 2396737 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 |||||| | || ||| ||||| |||||||| ||| | || ||||| | || || || Sbjct 2396736 TGAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTCTA 2396677 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||||| ||||| ||||| || ||||||||||||||||| | | || ||||| Sbjct 2396676 TGGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTATTCTTTGTTAATTGATAC 2396617 Query 57848 GTAC 57851 |||| Sbjct 2396616 GTAC 2396613 Score = 118 bits (130), Expect = 9e-22 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||| | ||| |||| ||||| ||||||||||| | ||||| ||| ||| || || Sbjct 2397024 GAGCCATTATTGAAAGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGAT 2396965 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||||||||| || |||||||| |||||||| || ||||||||||| || Sbjct 2396964 ATTTGGCAAATGTACAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTAGATCTT 2396905 Query 57630 TCTAA 57634 ||||| Sbjct 2396904 TCTAA 2396900 >seq2112 Length=2858 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || || ||||| || || | || |||||| | ||| Sbjct 165 ATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTCC 224 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||||||||| | || || ||||| Sbjct 225 GATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGTATTCCACCTGACCAA 284 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||| | | || || ||||| ||||| || ||||| | | | || | ||||||||| Sbjct 285 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGA-TGGACGTACACTTTCCGATTATAA 343 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 ||||||||||||||||||||||| || |||||| | || | || ||| || Sbjct 344 TATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCGA 395 >seq7885 Length=810 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| || || | || |||||| | ||| Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || |||||||| Sbjct 687 GATACCATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAA 628 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| ||||| || ||||| | ||| | ||||||||| Sbjct 627 CAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTATAAT 568 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || || ||||| || || |||| | || |||| Sbjct 567 ATTCAAAAAGAATCAACCCTCCATCTCGTTCTACGACTTCGTGGTGGTA 519 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| ||||| | || |||||| | ||| Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGG-AAAACCATCACTCTGGAGGTTGAAGCTTCC 461 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | ||| || |||||||| | || || || || Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 401 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| || ||||| | || | ||||||||| Sbjct 400 CAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCGGATTATAAC 341 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| ||||||||||| |||||| | || | || |||| Sbjct 340 ATCCAGAAAGAATCAACTCTTCATCTTGTACTTCGTCTTCGTGGTGGTA 292 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| ||||| || || ||||| || || | || |||||| | || Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || || ||| Sbjct 232 GATACAATTGAAAATGTTAAAACTAAAATTCAAGATAAGGAAGGTATTCCACCAGATCAG 173 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| |||||| | ||||| | || | |||||||| Sbjct 172 CAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGGATTATAAT 113 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || ||| | ||||| Sbjct 112 ATTCAAAAAGAATCAACACTACATTTAGTACT 81 >seq1955 Length=5322578 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| || || ||||| ||||| | || |||||| | || Sbjct 1861255 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTCA 1861196 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || || || ||||| | || || || ||| Sbjct 1861195 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCACCTGATCAG 1861136 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || || |||||||||||| | ||||| | ||| | ||||| || Sbjct 1861135 CAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTACAAT 1861076 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||| || ||||||||||||||| | |||| |||| || Sbjct 1861075 ATTCAAAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGGGGAGG 1861029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||| | ||||| ||||| |||||| | || |||||| | Sbjct 1861941 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGC 1861882 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | || || | || || || ||||| | || || || Sbjct 1861881 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGA 1861822 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || ||||||||||| | ||||| || || | ||||| Sbjct 1861821 TCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTA 1861762 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGGGG 31416 ||| ||||| ||||| || ||||||||||| ||| | ||||| |||||| Sbjct 1861761 TAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGG 1861712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || |||||| | ||||| ||||| |||||| | || |||||| | Sbjct 1864581 AAAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGC 1864522 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | || || | || || || ||||| | || || || Sbjct 1864521 TTCAGACACAATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGA 1864462 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | || || ||||||||||| | ||||| || || | ||||| Sbjct 1864461 TCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTA 1864402 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGGGG 31416 ||| ||||| ||||| || ||||||||||| ||| | ||||| |||||| Sbjct 1864401 TAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGGG 1864352 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||| || |||||||| || || | || |||||| | || Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || || || ||||| | || || || ||| Sbjct 1861421 GACACAATAGAAAATGTAAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAG 1861362 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||| |||||| | ||||| | ||| | || ||||||| Sbjct 1861361 CAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCAG--ATTATAAT 1861304 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||| | || | ||||| Sbjct 1861303 ATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACT 1861266 >seq1429 Length=9113309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 22447 ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGT 22506 |||| | || || ||||||||||| || |||| || | | | |||||| ||| || Sbjct 7667261 ATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTTCTTGTGTAAATATTGCTGGT 7667202 Query 22507 GAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGG 22566 | | ||||| | ||||||||| ||||| | || || || || || || || |||||||| Sbjct 7667201 GTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCTGTTGATGCTGTTGGCATCGG 7667142 Query 22567 CGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCA 22626 || | | | || ||||| | || | || | |||||| | || | || | ||| Sbjct 7667141 TGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAATTTT-TTTTTTAAAATAGTCCA 7667083 Query 22627 GTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 ||||| | || | || | ||||| ||||||||||||||| || Sbjct 7667082 ATCCCATAAATTAGTTGGAATAACATT---CCACATATCGTATTGTAA 7667038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445722124252320