Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1883 96.9 7e-15 seq2024 86.0 1e-11 >seq1883 Length=454209 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 |||||||||| || || ||||| ||||||||||| || ||| ||| |||||| | | Sbjct 61436 ATGATAGAAGAATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTAC 61495 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 |||| || || || |||||||||||| |||| |||||| || ||||| | | Sbjct 61496 CTCCTTGTCATTGTTTTGTTCAATTTTATGTAAGCAATGAAGAATTATCATGCCAACTTT 61555 Query 35649 ATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCT 35704 |||| |||| | ||| | || | || || || || ||||||||||| || ||| Sbjct 61556 ATCAAAGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCT 61611 >seq2024 Length=8919894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| ||||||||||| ||||| || |||||||||||| || || | ||||||||| Sbjct 2396410 GTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGGTAGTTTTGCCGCTATTTTCTGG 2396351 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||| || |||| || || || | ||||||| | |||||||| || Sbjct 2396350 TTAAAAAAAAGAGGTCTTATGCCAGGACTTACATTTAGCAATGAGCTTATTTCTAGAGAT 2396291 Query 102038 GAAGGTC 102044 | ||||| Sbjct 2396290 G-AGGTC 2396285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989483252308430