Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1429 149 8e-31 seq2024 147 3e-30 >seq1429 Length=9113309 Score = 149 bits (164), Expect = 8e-31 Identities = 226/314 (72%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| ||||||||||| || || | | |||||| | |||||| ||||| || Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || || ||||| | ||||||||| | ||| || |||| |||| ||||| | || | | Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT-TGG 7665081 Query 63513 CCT-CCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | || || || |||||| | || | | || || || || || || |||| | Sbjct 7665080 TGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTAA 7665022 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTA 63629 | | |||||||| |||||| || || || || ||||| || ||||| || ||| ||||| Sbjct 7665021 TGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTA 7664962 Query 63630 AGTAGAAAACAGCT 63643 | || |||||| || Sbjct 7664961 A-TAAAAAACAACT 7664949 Score = 138 bits (152), Expect = 1e-27 Identities = 241/347 (69%), Gaps = 14/347 (4%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||||||||| ||| || || ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| |||||||| | |||||| | | |||||| |||| || | | ||||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 7666560 Query 62905 GAAAATCAAATCGCCCATCTA-------TTACAAACATGTTCAATGCAACAGATGCCAGA 62957 ||||||||||| || || |||||||||| || | |||| || || | | Sbjct 7666559 GAAAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAA 7666501 Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 |||||||| || || |||| | | | ||| || | | || || || | ||||||| Sbjct 7666500 TTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTA 7666441 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||| || ||||||| |||||| ||||| || || || ||| |||||||| Sbjct 7666440 CTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGC 7666381 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 || ||||||| || ||||||| ||||| | ||| ||| |||| Sbjct 7666380 ATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 7666334 Score = 138 bits (152), Expect = 1e-27 Identities = 191/266 (72%), Gaps = 1/266 (0%) Strand=Plus/Minus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 || || || ||| || | | ||||| ||| || || || |||| ||| | | ||| Sbjct 7667341 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 7667282 Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 || |||||| ||| | | ||| || || || ||||| || ||||| |||| ||||| Sbjct 7667281 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 7667222 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 | ||||||||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 7667221 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 7667162 Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 62534 |||||||| || ||||| ||||| | || ||| |||||||| || ||| | ||| Sbjct 7667161 GTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAATT 7667102 Query 62535 TTATCTTTTAGATGTTCCCAATTCCA 62560 || | ||| | || | ||||| ||| Sbjct 7667101 TTTTTTTTAAAATAGT-CCAATCCCA 7667077 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | ||||||||| ||||| ||||||||||| | ||| | |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63881 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 63882 TAAATAATAACCGAATTGAGCTTAT 63906 ||||| || | ||||| | ||||| Sbjct 7664642 TAAATTATTGCAGAATTTAACTTAT 7664618 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| | ||||| |||| ||| || || ||||| ||| Sbjct 7666927 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCA 7666868 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | |||||||| |||| |||| || | |||||| || || |||||| Sbjct 7666867 CCATAATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAAT 7666808 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 |||||| | | || ||| || || || | ||||||| |||||||| Sbjct 7666807 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || | |||||||||| | | | |||| |||||| |||||||| || | Sbjct 7665969 TTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTGGACACATTAAAGT 7665910 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || | |||| |||||||||||||| |||||||| ||||| ||||| ||| | Sbjct 7665909 CCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAGAGC-ATAGA 7665851 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 ||| ||||| | ||||| ||| || || ||||| Sbjct 7665850 ATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 >seq2024 Length=8919894 Score = 147 bits (162), Expect = 3e-30 Identities = 159/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || |||||||| | ||||| || || || |||||| || ||||||||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 ||||| || ||||||||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 34032 TCGTCTGG-TGTTAGTTTATTCCAATCA 34058 || |||| |||| |||||||||||| Sbjct 2396794 TC-ACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 2397007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||||| | || ||||| || ||||||||||| || ||||| |||||| ||| Sbjct 2395963 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 2396022 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | || ||| ||||| ||||| | || ||| || | || | || | ||||||||||||| Sbjct 2396023 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 2396082 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG---ATGTAAT 33563 || || |||| | ||||| || |||| | ||||| | ||| |||| Sbjct 2396083 ATTTTAACAGCATCCTTAATAATTGATGTAAC---TCGTTCACAAGATGGTTTTTGTACA 2396139 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2396140 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCT-TGAGACATAACTCCCATTTT 33292 |||||| ||| ||| | || ||||| | | || |||| | ||| |||||| ||| Sbjct 2395705 TTAAAATTCAGCATTAACAGTAAAATTACTTTCAATTCTATCTTGCATTACTCCCCATTT 2395764 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAA-TTAGTTTTTCCTTCCAATGATATATTTT 33351 ||| ||||| ||||| ||||| ||| || || || || ||||| || || |||| || Sbjct 2395765 TTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATGTT 2395824 Query 33352 CCATGAAATCAAACGGATT 33370 ||||||||||||||||||| Sbjct 2395825 CCATGAAATCAAACGGATT 2395843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629755043366880