Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1429 178 1e-39 seq2024 154 1e-32 >seq1429 Length=9113309 Score = 178 bits (196), Expect = 1e-39 Identities = 228/311 (73%), Gaps = 5/311 (2%) Strand=Plus/Minus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 ||| ||||| ||||||| | | |||| ||| || || || | || ||| | || ||| Sbjct 7667342 TTGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCT 7667283 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 ||| |||| |||| || ||||||||||| ||||| ||||| || | ||||| Sbjct 7667282 TTCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCT 7667223 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 |||||| || |||||||| || |||||||| || || |||||||| | ||| ||||| | Sbjct 7667222 TCTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 7667163 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 ||| ||||| || ||||| ||||| |||| | |||||| | ||||| | || ||| Sbjct 7667162 TGTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAAT 7667103 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCA 37341 | | ||||||| | ||||||||||||||| ||||| | | || ||||||||| Sbjct 7667102 T-TTTTTTTTAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATT--CCACATATCG 7667046 Query 37342 TATTGTAGAAT 37352 ||||||| ||| Sbjct 7667045 TATTGTAAAAT 7667035 Score = 145 bits (160), Expect = 7e-30 Identities = 215/301 (71%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 38095 TTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | |||||| || || ||||| || ||||||||||||| ||| || | | Sbjct 7665248 TTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGCAAA 7665189 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 |||||| |||||||||| ||||| |||| || ||||| | |||| ||||| |||| ||| Sbjct 7665188 TGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATACTCT 7665129 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || | | |||||||||| || | |||| | ||| ||||| | || Sbjct 7665128 AATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGC 7665069 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATT 38332 ||| ||| | || | ||| || ||||| || || ||| | || | |||||| Sbjct 7665068 TCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTACTAATGAGTGCGCATC 7665010 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 |||||| ||||| | || ||||| ||||| || || | |||| || || |||||||| Sbjct 7665009 TTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAAAACAAC 7664950 Query 38393 T 38393 | Sbjct 7664949 T 7664949 Score = 109 bits (120), Expect = 5e-19 Identities = 245/365 (67%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 ||||||| ||||||||| | ||| || | || |||| | ||||||||||||| Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 37598 TATCTATTATTTTATTTAGATTTTTAACTAGT----ATTTTCGTAATTATTCTCAACTTG 37653 ||| || ||||| | ||||| || ||| ||||| || | | ||| || || Sbjct 7666616 CATCGATAATTTTGTCGAGATT----ACAAGTAACAATTTTTGTTACT-TTCAGAAGTTT 7666562 Query 37654 TCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAG 37706 | ||| || |||| | ||| ||| ||||| || | | | ||| || ||| Sbjct 7666561 TTGAAAATCAAATGTTTGATTATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAA 7666502 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 |||||| ||||||||||||||| | | | || | || |||||||| | |||||| Sbjct 7666501 ATTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACT 7666442 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | |||||||| | ||| ||||| ||||| ||| ||| ||||||||| || Sbjct 7666441 ACTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAG 7666382 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 ||||| || |||||| ||| | ||||| | ||||| | |||||||| ||| || Sbjct 7666381 CATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGC 7666322 Query 37887 TTTAA 37891 || || Sbjct 7666321 TTGAA 7666317 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||||||||| || |||||| | ||| || || | |||| Sbjct 7667618 CCATTTTCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATAT 7667559 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || |||||||||| ||||| Sbjct 7667558 GAACATTTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAA 7667499 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | |||||| | ||| |||||||| |||||||| | ||||| || |||||||| Sbjct 7667498 TTATTTTTTGTGGTATTTCCCAAACTGTTTTATAAAGCATTTTTAAATCATCTGGTA 7667442 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38424 AAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTAT 38483 ||| | ||| |||||||||||| | || | ||| || ||| ||||||| |||||||| Sbjct 7664850 AAAAAGTGTTGGAGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTAT 7664791 Query 38484 TACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | | ||| ||||| | || || ||| | | | || ||||||| |||||| ||||| Sbjct 7664790 AGCTTTATCAATATCTTCACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGG 7664731 Query 38544 TCTTTCTATTATTTTATTAT-TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTC 38602 |||||| | || ||| || | | ||||| || ||| | |||| | ||||| | | Sbjct 7664730 TCTTTCAACTACTTTTCCATGTATTTTTAA-TAAATAACTTCTTTCAAGCGTTTTGAAAC 7664672 Query 38603 CAAAATAACTATATGAATAATCTCTATCGTA 38633 |||||||| |||| | |||||||||| || Sbjct 7664671 CAAAATAATTATAACTAAAATCTCTATCATA 7664641 >seq2024 Length=8919894 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || ||||| ||||| ||| ||||||||||||||||| ||||||||| || | |||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| |||||||||| ||||| || | ||||| ||| | | |||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||||| ||||| |||||| | |||||||||||||| | ||| |||||| | |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 12080 TCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 || |||||| |||| ||||||| || ||| Sbjct 2396794 TCACTGGCAGTTAAATTATTCCAATCAAATACATC 2396828 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||||||||| ||| | |||||||||||| || ||||| ||||| ||| || Sbjct 2395960 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 2396019 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||| ||||| ||||| | || || || | ||| |||| ||||| || | | Sbjct 2396020 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 2396079 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || ||||| ||||| | || || || || | ||| ||||||| |||| Sbjct 2396080 TCAATTTTAACAGCATCCTTAATAATTGATGTAACTCGTTCACAAGATGGTTTTTGTACA 2396139 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||| ||||||||||| ||||||||||||||||| || Sbjct 2396140 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2396180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468478263774240