Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq878 129 6e-25 seq1955 120 3e-22 seq7885 113 4e-20 seq2112 96.9 3e-15 seq2024 93.3 4e-14 seq3153 82.4 8e-11 >seq878 Length=1131996 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| ||||| || | || |||||||||||||| |||||||| | Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| || ||||| |||||| |||||| | ||||||||| || || Sbjct 558585 AATGTGCGTCCA-TCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGG 558527 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||||| ||||| | ||| | || || | || ||| | Sbjct 558526 AATTCCTTCCTTATC-TTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAA 558468 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || || || ||||| ||||| || || || ||||| Sbjct 558467 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq1955 Length=5322578 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| ||||| || | ||||| |||||||| || |||||||| | Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATC--TG 1861314 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||||||||||||| |||||| ||||||||||| ||||| Sbjct 1861315 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||||| | ||| | |||||| | | || || Sbjct 1861375 ATTCCTTCTTTATC-TTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAAC 1861433 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || ||||| || | ||||| || || ||||||||| || Sbjct 1861434 TTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCATACCT 1861485 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | |||| ||||||||||||||||| || ||||| | || || Sbjct 1861041 CGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCA 1861100 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| | |||| |||||||||||| || || || |||||||| Sbjct 1861101 TCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTA 1861160 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||||| | ||| | |||||| | | || || |||| || | Sbjct 1861161 TC-TTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGAT 1861219 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | ||||| || || |||||||| Sbjct 1861220 AGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| ||||| || | ||||| || ||||| || |||||||| Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||||||| |||||| ||||||||| || || || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | |||| | ||| | |||||| | | || || Sbjct 1861603 ATTCCTTCTTTGTC-TTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 1861661 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || | ||||| || || |||||||| Sbjct 1861662 TTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| |||| |||| ||||||||||| ||||| |||||||| Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| | |||| |||||| ||||| || || Sbjct 1861771 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1861830 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | |||| | || | |||||| | | || || Sbjct 1861831 ATTCCTTCTTTATC-TTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAAC 1861889 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || || || || || || || ||||| Sbjct 1861890 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1861937 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| |||| |||| ||||||||||| ||||| |||||||| Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || ||||| |||||| | |||| |||||| ||||| || || Sbjct 1864411 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1864470 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | |||| | || | |||||| | | || || Sbjct 1864471 ATTCCTTCTTTATC-TTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAAC 1864529 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || || || || || || || ||||| Sbjct 1864530 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1864577 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || || || | ||||| |||||||| || || ||||| | ||| || || Sbjct 1860588 CAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTTCTTCCATC 1860647 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| | |||| ||||||||||| ||||| || |||||||| || Sbjct 1860648 TTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATC 1860707 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | ||||| | || | ||| || | | || || |||| || | | Sbjct 1860708 -TTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAG 1860766 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | ||||| || || || ||||| Sbjct 1860767 TCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| || | |||| ||||||||||| ||||| |||||||| Sbjct 1860802 CCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1860861 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| |||||||| |||||| | |||| |||||| || || || || Sbjct 1860862 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGA 1860921 Query 139658 ATGCCTTCTT 139667 || ||||||| Sbjct 1860922 ATTCCTTCTT 1860931 >seq7885 Length=810 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| ||||| || | || || ||||||||||| |||||||| Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 125 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||||||||||||||||||| | |||| | |||||||| || || Sbjct 126 AGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGA 185 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| |||| |||||| | | ||| | ||| || | | || || Sbjct 186 ATACCTTCCTTATC-TTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | |||||||| |||||||||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 293 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || ||||||||||| ||||||||| | || | ||||| | ||||| ||| Sbjct 551 GTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCA 610 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||||| | || || |||||||| || ||||||||||| ||| |||| | ||| Sbjct 611 GCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTC-TTGAATTTTGGCTTT 669 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | || |||| | || || || | || | || || || || | || Sbjct 670 TACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGT 729 Query 139747 TTTTACGAATATTTGCATA 139765 ||| || || ||||||||| Sbjct 730 TTTAACAAAAATTTGCATA 748 >seq2112 Length=2858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||||| || || ||||||||||| ||||||||| Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | ||||| |||||| |||||| | || || || || || Sbjct 331 AGTGTACGTCCA-TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGG 273 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||||| ||||| | ||| | ||| |||| | || | Sbjct 272 AATACCTTCCTTGTC-TTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAA 214 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | || || || || | || || ||||| |||||||| Sbjct 213 CTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCAT 165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | |||| ||||| ||||||||||| ||||||||| | || | Sbjct 151 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGAAAGAGTACGGCCA 92 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | ||||| |||||| | |||| | ||| ||||| ||||| || ||||||||| Sbjct 91 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCTTTG 32 Query 139670 TCGGTGATTTTTTGTTTT 139687 || ||| |||| | ||| Sbjct 31 TC-TTGAATTTTGGCTTT 15 >seq2024 Length=8919894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGC 52580 |||||| || | || ||| | || ||| | || ||||| ||||| | | ||||||| Sbjct 2396516 AGACTTTTTATTTAATGCTATCGAAAATTTGCCATGTGTTGCAAAAAAAGCTCATTGGGC 2396457 Query 52581 ATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTAT 52640 || || ||||| | | || | ||||||||| | |||||| |||| || |||||| Sbjct 2396456 GTTAAATTGGATAAATCATGAAAGTGCCACTTTTCCTGAACGTGTGGTTGCTTTTGCTGC 2396397 Query 52641 AGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGG 52700 ||| |||||| | || ||| ||||||||||| || || || | | |||| || Sbjct 2396396 AGTAGAAGGTATTTTCTTTAGTGGTAGTTTTGCCGCTATTTTCTGGTTAAAAAAAAGAGG 2396337 Query 52701 CATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739 | ||||| || || || |||||||| ||| | || || Sbjct 2396336 TCTTATGCCAGGACTTACATTTAGCAATGAGCTTATTTC 2396298 >seq3153 Length=1268 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | ||||| |||||||| || || ||||| | ||| || ||| Sbjct 1180 AATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTTCCATCT 1121 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || || |||||||||||| |||||| ||||| ||||| || || || |||||||| || Sbjct 1120 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1061 Query 139673 GTGATTTT 139680 |||||| Sbjct 1060 TGGATTTT 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496014728443200