Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1429 192 8e-44 seq2024 158 2e-33 >seq1429 Length=9113309 Score = 192 bits (212), Expect = 8e-44 Identities = 228/308 (74%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 || || || ||| || ||| ||||| ||| || || || |||| ||| | | ||| Sbjct 7667341 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 7667282 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 7667281 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 7667222 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | ||||||||||| ||||| |||||||| | |||||||||||||| |||||||| || Sbjct 7667221 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 7667162 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATT 79206 |||||||| |||||||| ||||| | || ||| |||||||| || ||| ||| Sbjct 7667161 GTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATATTTAGCAATT 7667102 Query 79207 TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATAT 79266 || | ||| | | | | ||||||||| | || || || | ||||||||| | ||| ||| Sbjct 7667101 TTTTTTTTAAAATAGT-CCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGTAT 7667043 Query 79267 TGTAGAAT 79274 |||| ||| Sbjct 7667042 TGTAAAAT 7667035 Score = 152 bits (168), Expect = 7e-32 Identities = 227/315 (72%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||| ||||||||||| || || | | |||||| | |||||| ||||| || Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 ||||| || | |||| |||| ||| |||||||| ||||| | |||| ||| || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 7665082 Query 80185 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | || || || |||||| | || | | || || || || || || |||| Sbjct 7665081 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 7665023 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTT 80300 || | |||||||| |||||| ||||| || || || || || ||||| ||| ||| |||| Sbjct 7665022 ATGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTT 7664963 Query 80301 AAGTAGAAAACAGCT 80315 || || |||||| || Sbjct 7664962 AA-TAAAAAACAACT 7664949 Score = 129 bits (142), Expect = 8e-25 Identities = 266/391 (68%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||||| ||| || || ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 ||| |||||||| | |||||| | | || ||| |||| || | | ||||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 7666560 Query 79577 GAAAATCAAATCGTCCATCTA-------TTACAAACATGTTCAACGCGACAGATGCCAGA 79629 ||||||||||| | || || |||||||||| || | || | || || | | Sbjct 7666559 GAAAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAA 7666501 Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 ||||| || || || |||| | | | ||| || | | ||| || || | |||||| Sbjct 7666500 TTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTA 7666441 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 | ||| || ||||||| |||||| ||||| || || || ||| |||||||| Sbjct 7666440 CTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGC 7666381 Query 79750 ATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 79809 || | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| Sbjct 7666380 ATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCT 7666321 Query 79810 TTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 | || | | | | ||| ||||||||| || Sbjct 7666320 TGAAT--TTGTCGTTTATATCTTTTCTCATT 7666292 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| |||| ||||||| || || ||||| || | || |||| || ||||| | Sbjct 7664437 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 7664378 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || | Sbjct 7664377 TTGCATAATCTGGATGTTTGGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTA 7664318 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 |||| || || ||||| || ||||| || |||||| Sbjct 7664317 ATTCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 7664278 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||||||| ||||| ||||||||||| | || || |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 || || ||| | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 80554 TAAATAAT 80561 ||||| || Sbjct 7664642 TAAATTAT 7664635 Score = 100 bits (110), Expect = 4e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 79847 GTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAG 79906 ||||||| | ||| || || | ||||||||||| ||| |||||| |||| | | Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 79907 GACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||||| || | ||| |||| |||| |||||||||||||| |||||||| |||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 79967 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 7665862 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | |||| | ||| || | |||||| || || ||||| || || ||| Sbjct 7666921 TAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCACCATAA 7666862 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || | ||||| || |||| |||| || | |||||| ||| || |||||||||||| Sbjct 7666861 TACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAATGGATAA 7666802 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || ||| || ||||| | ||||||| |||||||| Sbjct 7666801 CGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 >seq2024 Length=8919894 Score = 158 bits (174), Expect = 2e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || ||||| || || | | ||||||||| ||||||| ||||| ||||| | ||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || |||||||| | ||||| || || || |||||| || |||||||||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || ||||| ||| ||||||||||| || || ||||| ||||||||||||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCA 50436 || ||| |||| |||||||||||| Sbjct 2396794 TCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 109 bits (120), Expect = 8e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | |||||||||||||||||||||||| ||||| || || ||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| || ||| | |||| || || |||| |||||||||| ||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 2397007 Score = 104 bits (114), Expect = 3e-17 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| || || ||| ||| || ||||| ||||| || || | |||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || || | ||||| ||| |||||| || ||||||||||| ||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 50158 |||| | | || | || |||| || ||||| |||||| ||| ||||||| | Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 | || ||| ||||| |||| |||| || |||||||| | | ||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAAAAGT 2396514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||||| | || ||||| || |||||||| || |||||||| |||||| Sbjct 2395954 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 2396013 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 2396014 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 2396073 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGG- 49934 ||||||||||| || ||||| | ||||| ||| |||| | ||||| | ||| Sbjct 2396074 TCTTGTTCAATTTTAACAGCATCCTTAATAATTGATGTAAC---TCGTTCACAAGATGGT 2396130 Query 49935 --ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2396131 TTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATC--TTCT-TGAGACATAACTCCCATTTT 49670 |||||| ||| ||| | || ||||| | | || |||| | ||| |||||| ||| Sbjct 2395705 TTAAAATTCAGCATTAACAGTAAAATTACTTTCAATTCTATCTTGCATTACTCCCCATTT 2395764 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAA-TTAGTTTTTCCTTCCAATGATATATTTT 49729 ||| ||||| ||||| ||||| ||| || || || || ||||| || || |||| || Sbjct 2395765 TTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATGTT 2395824 Query 49730 CCATGAAATCAAACGGATT 49748 ||||||||||||||||||| Sbjct 2395825 CCATGAAATCAAACGGATT 2395843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718197457951440