Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2024 129 6e-25 >seq2024 Length=8919894 Score = 129 bits (142), Expect = 6e-25 Identities = 166/227 (73%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || | |||||||| ||||| ||||||||||| |||| ||| || ||||||||| || Sbjct 2395960 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 2396019 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 2396020 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 2396079 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATT-AGAAGGAGGATATTT 13852 || || ||||| || || ||||| ||||| ||| || | ||| || | || Sbjct 2396080 TCAATTTTAACAGCATCCTTAATAATTGATGTAA----CTCGTTCACAAGATGGTTTTTG 2396135 Query 13853 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2396136 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| |||||| || || |||||| | ||||||||| | |||| ||||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||||||| || || || ||||| || |||||| || || || ||||||||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||||| || | | || |||| ||||||||||||||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAA 2396510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 14127 TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTT 14186 ||||| | | || |||||| |||||||| | || ||||||||| || || | ||| Sbjct 2396596 TCTTTTGCATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTT 2396655 Query 14187 TCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAGTA 14245 ||||| || | ||||||||||| || || | || || | ||||||||| || | Sbjct 2396656 TCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT- 2396714 Query 14246 AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 ||||| ||| | | ||| ||||| || || |||||| |||||||||||||| || Sbjct 2396715 AAATCGTTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAA 2396771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTT-TTCAAAGAAGTTAGTTTTACCTTC 13627 || || ||| |||||||||||| | ||| |||| |||||||||||| || |||||||| Sbjct 2395751 ATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTC 2395810 Query 13628 CAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATA 13670 | || |||| |||||| |||||||| |||||| |||||| Sbjct 2395811 TAAAGAAATATGTTCCATGAAATCAAACGGATTTTCAGACATA 2395853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 14361 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14420 ||||||||||||||||| || |||||||||||| || |||||||||| |||||| | Sbjct 2396900 TTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTTGC 2396959 Query 14421 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTT 14473 || || || || ||||||||||| |||||||| || ||| ||||||| Sbjct 2396960 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTT 2397012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479680351016400