Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2024 111 2e-19 >seq2024 Length=8919894 Score = 111 bits (122), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || | |||||||| ||||| | ||||||||| |||| ||| || ||||||||| || Sbjct 2395960 ACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACAC 2396019 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | ||| ||||| ||||| | || ||||| | | || ||||||||||||| | Sbjct 2396020 ATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGT 2396079 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATT-AGAAGGAGGATATTT 13640 || || ||||| || || ||||| ||| || || | ||| || | || Sbjct 2396080 TCAATTTTAACAGCATCCTTAATAATTGATGTAAC----TCGTTCACAAGATGGTTTTTG 2396135 Query 13641 TAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | ||||| || |||||||| |||||||||||||| | |||| Sbjct 2396136 TACAATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| |||||| || || |||||| | ||||||||| | |||| ||||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||||||| || || || || || || |||||| || || || ||||||||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 13802 CTATTAGTCGTTCTCCAAACGATG--CTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 | | | ||||| ||| | | |||| || || |||||| ||| ||||| | Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATT--TATCCAATTTAACGCCCAATG 2396464 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||||| || | | || ||||||| ||||| |||||| Sbjct 2396465 AGCTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAA 2396510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 13915 TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTT 13974 ||||| | | || |||||| |||||||| | || ||||||||| || || | ||| Sbjct 2396596 TCTTTTGCATCTGCAATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTT 2396655 Query 13975 TCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAGTA 14033 || || || | ||||||||||| ||||| | || |||| |||||| || || | Sbjct 2396656 TCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT- 2396714 Query 14034 AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 ||||| ||| | | || ||||| ||||| |||||| |||||||||||||| || Sbjct 2396715 AAATCGTTCAACAAGATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAA 2396771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACC 14208 ||||||||||||||||| || |||||||||||| || |||||||||| |||||| | Sbjct 2396900 TTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTTGC 2396959 Query 14209 CATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAAT 14267 || || || || ||||||||||| |||||||| | ||| ||||||| | | Sbjct 2396960 CAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTTCAATAA 2397018 Query 14268 TGGCTC 14273 |||||| Sbjct 2397019 TGGCTC 2397024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478541264167440