Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7885 116 3e-21 seq1955 114 1e-20 seq2112 107 1e-18 seq878 107 1e-18 >seq7885 Length=810 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||||| || || ||||| | ||| |||||||| Sbjct 521 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAA 580 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || |||||||| || ||||| ||||||| |||||| |||| || Sbjct 581 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGA 640 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || || |||| || | ||| || ||| ||| || || Sbjct 641 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 700 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || |||||||| |||||||||||||| Sbjct 701 TCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| ||||| || | |||||| | || || | ||||| || |||||| Sbjct 102 TCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAA 161 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTC 43036 ||||||| ||| ||||| | || | |||||| || || ||| | | | ||| || Sbjct 162 ATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATC-TTGAATTTTAGT-TTTAACAT 219 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| ||| || ||| || || |||| || || |||||||| || |||||||| | Sbjct 220 TTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTA 279 Query 43097 CAAAAATTTGCAT 43109 |||| |||||||| Sbjct 280 CAAATATTTGCAT 292 >seq1955 Length=5322578 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| || |||| ||| | ||| ||| ||||| | ||||||||| || Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | |||||||| ||||||||||| || || ||||| | || Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || | | | |||||| ||| || || Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861208 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 1861209 TCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || ||||| || ||||| || |||||||| | || || ||||| | ||||||||| Sbjct 1860571 TCTCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCT 1860630 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | | ||| | | | || || | ||||||||| |||||||||||||| || ||||| | Sbjct 1860631 AAAAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGA 1860690 Query 43000 GGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 || | |||||||| || ||| |||| || | | | ||| || ||| || Sbjct 1860691 GGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCA 1860750 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || | || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 1860751 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || ||||| || || ||||||| || |||||||| | ||| ||||| || Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || |||||||| || ||||| ||||| || || || || | || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| ||| || || Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || || | ||| | ||| ||| || || | ||| ||||| || Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||||||||| ||||||||||| || |||||||| | || Sbjct 1861771 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1861830 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| ||| || || Sbjct 1861831 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1861890 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || |||||||| |||| ||| || ||||| || |||||||| Sbjct 1861891 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1861940 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || || | ||| | ||| ||| || || | ||| ||||| || Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || || | ||||||||| ||||||||||| || |||||||| | || Sbjct 1864411 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1864470 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| ||| || || Sbjct 1864471 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1864530 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || |||||||| |||| ||| || ||||| || |||||||| Sbjct 1864531 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTT 1864580 >seq2112 Length=2858 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||| |||||||| | ||||||| | || || |||||||| || ||||| Sbjct 355 TCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAG 296 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| |||||| || | || | |||||| || || || |||| || | Sbjct 295 ATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTT 236 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||| ||| ||| || || || | || |||||||| || || ||||| || || Sbjct 235 TCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACG 176 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 175 AAAATTTGCATT 164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| || || | ||| | || || ||||| | ||| |||||||| Sbjct 163 CCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGAA 104 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||||||||| || ||||||||||||| |||||||| | || Sbjct 103 AGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGGA 44 Query 43003 ACACCTTCTTTTTC 43016 | ||||||||| || Sbjct 43 ATACCTTCTTTGTC 30 >seq878 Length=1131996 Score = 107 bits (118), Expect = 1e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 42946 GTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACA 43005 ||||| | || ||||||||||| || ||||||||||||| ||||||||||| || | | Sbjct 558810 GTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATA 558751 Query 43006 CCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTC 43064 |||||||| || ||| || |||| || | ||| || || ||| || || || Sbjct 558750 CCTTCTTTATC-CTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTC 558692 Query 43065 TACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || |||||||| || || ||||| ||||||||||||||| Sbjct 558691 TAAAGTAATCGTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCATT 558646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381332667452868