Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1429 156 6e-33 seq2024 149 8e-31 >seq1429 Length=9113309 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 || || || ||| || ||| ||||| |||||| || || |||| ||| | | ||| Sbjct 7667341 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 7667282 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 || |||||| ||| | | ||||||||| || |||||||| ||||| |||| ||||| Sbjct 7667281 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 7667222 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 | ||||||||||| ||||| || ||||| | || ||||||||||| |||||||| || Sbjct 7667221 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 7667162 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCAT 71278 |||||||| || ||||| ||||| | || | | |||||||| |||| Sbjct 7667161 GTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCAT 7667113 Score = 150 bits (166), Expect = 2e-31 Identities = 227/316 (72%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || ||||| ||||||||||| || || | | |||||| | |||||| ||||| || Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 ||||| || | |||| || | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 || || ||||| | ||||||||| | |||||| ||| ||||| || || || ||| | Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 7665082 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || || || ||||| | || ||| || || || || || || |||| Sbjct 7665081 GTGTACCTCTTGCTCGAATACAATGTACATT--AAGTCCAATACCACCAGCTGATTTACT 7665024 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 72382 || | |||||||| |||||| ||||| || || || || |||||||| || ||| ||| Sbjct 7665023 AATGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGT 7664964 Query 72383 TAAGTAGAAAACAGCT 72398 ||| || |||||| || Sbjct 7664963 TAA-TAAAAAACAACT 7664949 Score = 143 bits (158), Expect = 4e-29 Identities = 269/391 (69%), Gaps = 16/391 (4%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||||| ||| || || ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 ||| |||||||| | |||||| | | || ||| |||| || | | ||||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 7666560 Query 71660 GAAAATCAAATCTCCCATCTA-------TTACAAACACGTTCAAGGCAACAGATGCCAGA 71712 ||||||||||| | || || ||||||||| || | |||| || || | | Sbjct 7666559 GAAAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAA 7666501 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 ||||| || || || |||| | | || ||| || | || ||| || || | ||||||| Sbjct 7666500 TTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTA 7666441 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 | ||| || ||||||| |||||| ||||| || || || ||| |||||||| Sbjct 7666440 CTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGC 7666381 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 71892 ||| | ||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| Sbjct 7666380 ATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCT 7666321 Query 71893 TTTATTATATTCTTGTATCTCTTTTCTCTTT 71923 | || | || | ||| ||||||||| || Sbjct 7666320 TGAAT--TTGTCGTTTATATCTTTTCTCATT 7666292 Score = 104 bits (114), Expect = 3e-17 Identities = 182/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||||||||||||| ||||||||||| | || || |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 72637 TAAATAATAACCGAATTGAGTTTAT 72661 ||||| || | ||||| | |||| Sbjct 7664642 TAAATTATTGCAGAATTTAACTTAT 7664618 Score = 100 bits (110), Expect = 4e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| |||| ||||||| || || ||||| || | || |||| || |||| | Sbjct 7664437 CACTAAAACTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 7664378 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||||||||||| ||||| ||| |||||| |||| ||||| ||| | || | Sbjct 7664377 TTGCATAATCTGGATGTTTGGTAGTCATAGTTGCTGCTGTTTCAGCTGCAAGATTATCTA 7664318 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 |||| || || ||||| || ||||| || |||||| Sbjct 7664317 ATTCAACAGTAGTTACACCTGAATATAAACCACTGATAAC 7664278 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||| || || |||| |||| || ||| || |||||||| || || ||||| || Sbjct 7666927 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCA 7666868 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||| | ||||| || |||| |||| || | |||||| || || |||||| Sbjct 7666867 CCATAATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAAT 7666808 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 7666807 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 ||||||| | ||| || || | |||||| ||| ||| |||||| |||||| | Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 ||||||| || | ||| |||| ||| |||||||||||||| |||||||| |||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 72050 AAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 | ||||| ||| |||| ||||| | ||||| || || || ||||| Sbjct 7665862 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 >seq2024 Length=8919894 Score = 149 bits (164), Expect = 8e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || ||||| || || | | ||||||||||||||||| ||||| ||||| | ||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || |||||||| | ||||| || | ||||||||| || |||||||||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCA 42541 || | ||||| |||||||||||| Sbjct 2396794 TCACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 113 bits (124), Expect = 6e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | |||||||||||| || |||||||| |||||||| || ||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||| |||||| | ||||||| || |||| |||||||||| ||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTT 2397007 Score = 104 bits (114), Expect = 3e-17 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | || ||| ||| || ||||| ||||| || || | |||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || |||| ||||| ||| |||||| || ||||||||||| ||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 ||| | | || | || |||||| ||||| |||||| ||| ||||||| | Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 | || ||| ||||| |||| |||| || |||||||| | | ||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAAAAGT 2396514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTC--TTCT-TGAGACATAACTCCCATTTT 41775 |||||| ||| ||| | || ||||| | | || |||| | ||| |||||| ||| Sbjct 2395705 TTAAAATTCAGCATTAACAGTAAAATTACTTTCAATTCTATCTTGCATTACTCCCCATTT 2395764 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAA-TTAGTCTTTCCTTCCAATGATATATTTT 41834 ||| ||||| ||||| ||||| ||| || || ||||| ||||| || || |||| || Sbjct 2395765 TTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATGTT 2395824 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||||||||||||||| Sbjct 2395825 CCATGAAATCAAACGGATT 2395843 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/234 (68%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||||| | || ||||| || ||||||||||| | ||||| |||||| Sbjct 2395954 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 2396013 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 2396014 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 2396073 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 42039 ||||||||||| || || || | ||||| ||| | || | ||||| | ||| Sbjct 2396074 TCTTGTTCAATTTTAACAGCATCCTTAATAATTGATGTAAC---TCGTTCACAAGATGGT 2396130 Query 42040 ----ATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||||| ||||| ||||| |||||||| ||||| || || | |||| Sbjct 2396131 TTTTGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671072539098960