Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1955 143 3e-29 seq878 129 6e-25 seq7885 118 1e-21 seq3153 116 4e-21 seq2112 98.7 1e-15 seq182 95.1 1e-14 >seq1955 Length=5322578 Score = 143 bits (158), Expect = 3e-29 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | ||| |||||||| | ||||||||||||||| || || ||||| | Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATC--TG 1861314 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || |||||||||||| |||||| ||||||||||| ||||| Sbjct 1861315 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||| || ||||| | ||| | ||||||| | ||| ||| Sbjct 1861375 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACT 1861434 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| || | ||||| || || ||||||||| || Sbjct 1861435 TCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCATACCT 1861485 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | ||| || ||||| | ||||||||||||||| || |||||||| Sbjct 1860574 CCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAA 1860633 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| |||||||| |||||| | |||| ||||||||||| ||||| Sbjct 1860634 AGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 1860693 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||| || ||||| | || | || |||| | ||| ||| Sbjct 1860694 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACT 1860753 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || | ||||| || || || ||||| Sbjct 1860754 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | ||| |||||||| | ||||||||| ||||| || || ||||| Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| ||||||||| || || || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || |||| | ||| | ||||| | | ||| ||| Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||||| || || |||||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || | ||||| ||||| |||||||| || |||||||| Sbjct 1861029 CCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAA 1861088 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || ||||| |||||| | |||| |||||||||||| || || Sbjct 1861089 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGA 1861148 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||| || ||||| | ||| | ||||| | | ||| ||| Sbjct 1861149 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861208 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 1861209 TCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 >seq878 Length=1131996 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||||| |||||||| | ||| || |||||||| || || ||||| | Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| |||||||| |||||| |||||| | ||||||||| || || Sbjct 558585 AATGTGCGTCCA-TCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGG 558527 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||||||| ||||| | ||| | || || | || || || Sbjct 558526 AATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAAC 558467 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||||||||| || || || ||||| Sbjct 558466 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq7885 Length=810 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||||| |||||||| | ||| ||||||||||| || || ||||| Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 125 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||||| |||||||||||| | |||| | |||||||| || || Sbjct 126 AGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGA 185 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || | | |||| |||||| | | ||| | || || | | ||| || Sbjct 186 ATACCTTCCTTATC-TTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || || | |||||||| |||||||||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 293 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || ||||||||||| || || |||||| | || | ||||| Sbjct 538 AACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTC 597 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| |||||| |||||| | || || |||||||| || ||||||||||| Sbjct 598 TAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTG 657 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||||| | ||| | || || | | ||| ||||| | ||| | || || Sbjct 658 AATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTT 717 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| || || ||||||||| Sbjct 718 ACCCGTAAGAGTTTTAACAAAAATTTGCATA 748 >seq3153 Length=1268 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | || |||||||| | ||||||||||||||| || |||||||| Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| ||||||||||||||| |||||| ||||| ||||| || || Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| |||| | || | || || | | ||| ||| Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || | ||||| || || || ||||| Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq2112 Length=2858 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || | |||| || ||||||||||| || || |||||| Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | |||||| |||||| |||||| | || || || || || Sbjct 331 AGTGTACGTCCA-TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGG 273 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||||||| ||||| | ||| | || || | | ||| || Sbjct 272 AATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAAC 213 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | || || || || | || || ||||| |||||||| Sbjct 212 TTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCAT 165 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||||||| | ||||| ||||||||||||||| || || |||||| | || | Sbjct 151 CGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGAAAGAGTACGGCCA 92 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| |||||| | |||| | ||| ||||| ||||| || ||||||||| Sbjct 91 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCTTTG 32 Query 143090 TCGGTAATTTTTTGTTTTA 143108 || |||||| ||||| Sbjct 31 TCTTGAATTTTGGCTTTTA 13 >seq182 Length=1849075 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | ||| || |||||| | || |||||||| ||||| || ||||| |||||||| Sbjct 122876 TCTTCTAATTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTA 122935 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||||| ||| | | ||| | || || | | ||||||||||| ||| | Sbjct 122936 TCCTGAATTTTAGCTTTCACATTTTCTATAGTATCTGATGCTTCTACTTCAAGAGTGATA 122995 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || ||||| ||||| || ||||| ||||| Sbjct 122996 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 123030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506964040794720