Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_004746.1 Length=36596 Score E Sequences producing significant alignments: (Bits) Value seq1563 230 5e-56 seq7019 80.6 6e-11 >seq1563 Length=10698 Score = 230 bits (254), Expect = 5e-56 Identities = 733/1112 (66%), Gaps = 50/1112 (4%) Strand=Plus/Plus Query 14998 GGGCAAGTTAAAGTTCCTAACCGTCAATTTGTTCAAATTTCAACAGCATATCCTGACCCT 15057 |||||||||| ||||| ||| |||||| ||| ||||||| |||||||||| || || Sbjct 2592 GGGCAAGTTA---TTCCTTACCATCAATTCGTTAAAATTTCGTCAGCATATCCAGATCCC 2648 Query 15058 ACAGTTCCCTTTCATGAAGATGAGAAGATGC--TGCAACAAGC--AATGGAACAAGACTT 15113 |||| || ||||||||||| |||| | || ||||| ||| |||||| ||||| || Sbjct 2649 ACAGGGCCATTTCATGAAGA--AGAAAAAGCCATGCAA--AGCCTAATGGAGCAAGATTT 2704 Query 15114 TTTAAGAGATGCTGATACTTATCTATGTTTAATTTGGAGTAATGACAGTTTAGATGAAAC 15173 | | | || | || | || |||| | ||| | ||| |||||| ||||| Sbjct 2705 TAAACGCGAAGGCGAAAACATGCTCTGTTGTGTGTGGGCGCAGGACTCTTTAGAAGAAAC 2764 Query 15174 TTATAAGCCAGAAACTTGGGTAAAATCAAATCCT-TTATTAGATTT--AGCTTCAGAACA 15230 ||| | ||| |||| |||| || || ||||| |||| | || || ||||| Sbjct 2765 TTACATGCCTGAAATGTGGGCTAAGTCTAATCCACTTATCAACTTGTCAGGCCAAGAACG 2824 Query 15231 TGATAATCTCATGCAAGGACTACTTGATAAGCGTGATAACGATGTACTTACTGGTGCTGT 15290 || | || || || | || |||| || | | |||| ||| | | | Sbjct 2825 AGAACGACGCACTAAAAATCTGATCAATCAGCGCGACCAAGCCTTACTAACTAATACGTT 2884 Query 15291 TCATGACTTCCAATGTAAGAATCTTAACATGTGGCTTTCATCAGATATAGA-CAGTTATT 15349 ||| | || || ||||| || || ||||| || | ||| | ||| || | Sbjct 2885 GCATAAATTTCAGAATAAGACGCTAAATTTGTGG-TTAAAGCAGTCCACCAGCAGCTACT 2943 Query 15350 TAAACCTAGCAGATGTTGAAAAAGCGATTGTTCCTGAATTTAATATCTATGGTCAACGCT 15409 |||| || |||||| ||||| || ||| | ||| || || || | |||| | Sbjct 2944 TAAAACTGCAAGATGTAGAAAATGCCGTTGATGATGATTTCAAAATTGACGGTCGTCAAG 3003 Query 15410 GTTATGTTGGTGTTGACTATTCTATGTCATCAGATAATACAGCAGTTGCTTTTGTTTACC 15469 || | || | || ||||| |||| || || |||||||| ||| ||||||||| | Sbjct 3004 TATACATCGGCTTGGATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATC 3063 Query 15470 CGTATGTAAGCGAAGAAGGGCAGGCAAAATGGCATGTTGAACAACATTCGTTTATTCCTT 15529 | ||| || |||||||||||| || ||||||| ||| ||||| |||||||| | Sbjct 3064 CATATCAAAATGAAGAAGGGCAGCCACGATGGCATATTGCTCAACACAGTTTTATTCCGT 3123 Query 15530 TTCAAGCTGCAGGGTCAATTGAAGCCAAAGAAAAGCAAGATGGTATTAACTATAGAGAAC 15589 ||| || || || |||| || ||||||||||||||||||||| ||| || Sbjct 3124 GGCAACAAGCCGGATCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGT 3183 Query 15590 TTGAAACCAAAGGATTCTGTACAATCACAAGTCATCAACAAGGATTAATCAATGATGATG 15649 || || || || ||||||||||| ||| || ||||| | || ||| || Sbjct 3184 TT----CCTGAG--TTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAAC 3237 Query 15650 AATTCTATGAGTGGATTGTAAATTATATAGAAGAAAATTCACTT--GACGTTTTATTTTT 15707 || | ||| | ||| || || | ||| | |||||| | || || | || | || || Sbjct 3238 AAGTTTATAAATGGCTTTTAGACTATGTTGAAGAACA--CAATTTAAAGGTCATTTTCTT 3295 Query 15708 TGGATATGA-TGCAATGGGAGTGA----CTAAAG----TTATTCAAATGCTGCTTAAT-- 15756 ||||||||| | ||| ||| | ||||| ||| | ||| ||| | ||| Sbjct 3296 TGGATATGACCGTTTTGGCAGTTATCAGGTAAAGAATATTACTGAAA-GCT--TAAATGC 3352 Query 15757 -AATACTGG-ATTTAATTTGCAACCTATTAGGCAACGGACAGGAGAACTGGCAAAGCCCA 15814 ||||| || |||||| ||| || ||| ||||| | || || || || || | Sbjct 3353 CAATACAGGTGGTTAATT--CAAGACATAGCACAAAGGACAAGCGAGCTTGCCAATCCTA 3410 Query 15815 CTAAATTCTTACAAAAGATATTTGTTGAAGGAACAATTAGCCGTCTGGATGACAAAATAA 15874 ||||||| || ||| | | |||| | || | ||||| ||| | | || || Sbjct 3411 CTAAATTTTTGCAAGAAAGCTTTGCTACCGGGAAAATTACCCGGTTCAACGATCCGATTT 3470 Query 15875 TGGAAAAAGCATTATTAAATGC-TGTATTGCGTGAAGATTCAGTTGGTATTCAAGTAGAT 15933 | ||||||||||| | ||||| | |||| |||||| | | || || ||||| || Sbjct 3471 TAGAAAAAGCATTGCTTAATGCTTCTATT-AAAGAAGATAAAATCGGGATACAAGTTGAC 3529 Query 15934 AAGCGAAAAGCTACACTTAAAATTGACGTTGTTGATGCAATTATAGATGCTCTATATCAA 15993 ||| |||||||| || |||||||| || ||||||||| | || ||||| | |||||| Sbjct 3530 AAGGATAAAGCTACTCTAAAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAA 3589 Query 15994 GGTATGAATCATTTTGAAGATTATGGTATGGCTAATGATAGAAGTTGGC--AAGTTGAGC 16051 || ||||| ||||||||| | ||||| || || ||| || | | | |||| || | Sbjct 3590 GGGATGAACCATTTTGAAAAGTATGGAATTATCAACGAT--AAATCGACTGAAGTAGAAC 3647 Query 16052 ATATGACACCAGAACAAGTAAAAGAATGGGTT 16083 |||||| | |||||| || || |||| || Sbjct 3648 GTATGACGCAAGAACAGGTTCTAGCATGGTTT 3679 Score = 150 bits (166), Expect = 4e-32 Identities = 455/693 (66%), Gaps = 25/693 (4%) Strand=Plus/Plus Query 18734 TGTTGAGAGTGTTTCTACTTCAAGCGGTAGTCGTGTATATGAAAAATGGACTGATGTTAC 18793 |||||| ||||| |||||| | ||| | | || ||||||||| | ||| |||| Sbjct 6195 TGTTGAAAGTGTGTCTACTGCTCATGGTTCTAGAGTTTATGAAAAACTAGCAGATATTAC 6254 Query 18794 TCCGTT-GAAAGCAATGGATGAAGAAGATGGAAAAATTCCTGATCTTGATAATCCACGTT 18852 || || | | | ||||||| ||| | | ||||| |||| ||||| |||| | Sbjct 6255 ACCATTTGTTAACC-TGGATGATGAAAAAGCTCAAATTGGTGATATTGATGATCCTAAGT 6313 Query 18853 TGACAATTATTAAATACTTGATTAAACGTTATGCGGGAATCATCACTGCAACTAATACAT 18912 | || | ||||| | ||| | ||||| || || || | || | ||||||||| Sbjct 6314 TAACTCTGATTAAGTTTGCGATCCATCGTTACGCTGGCATTACTACCGTTACTAATACAC 6373 Query 18913 TGCTTAAAGATACAGCAGAAAATATTCTTGCATGGTT--ATCAAGCTGGATTGCTAAGAA 18970 | | ||||| |||||||||||||||| ||||| | ||| ||| || || Sbjct 6374 TTTTGGCTGATACGGCAGAAAATATTCTTGGCTGGTTGCAACAA--TGGGCAGCACGCAA 6431 Query 18971 AGTGGTTGTGACTCGTAACCAAGCGATTATTGCAGCAATGGGTACAGTTCCTAAAAAACC 19030 | |||||||||||||| ||||| ||| | || | ||||| |||| || || || Sbjct 6432 GGATGTTGTGACTCGTAATCAAGCTATTCTGGCTGTTATGGGCACAGCACCAGCTAAGCC 6491 Query 19031 AACAATCGCTAACTTTGACGATGTTATTACTATGATTAATACATCTGTTGATCCTGCGAT 19090 || || |||||||||| ||| ||| || |||| | ||||||| || || Sbjct 6492 TACTATTACTAACTTTGATGATATTAAGGACCTGCAAAATAATACGCTTGATCCAGCAAT 6551 Query 19091 TATCGCTACTTCAAGTCTTTTGACTAACCAGTCAGGGTTGAATAAACTTGCTTTGGTTAA 19150 |||||| |||||||| | | |||||||| || || || ||| || || | || Sbjct 6552 TATCGCAACTTCAAGCTATGTTACTAACCAATCTGGTTTTAATGTTCTATCTAAAATGAA 6611 Query 19151 AACTGCTGAAGGTAAATATTTGCTCGAACCAGACCCAACAAAACCT-AATTCATATCTAA 19209 | ||| || ||| ||||| | |||| | ||| || ||| || | | | | Sbjct 6612 AGATGCAGATGGTCGTTATTTAATTCAACCTAATGTAACTAATCCTGAAGTTAAAGAGAT 6671 Query 19210 TTAAAGGTAAACA---AGTTATTGTTGTTGCAGATCGCTGGCTTCCAAATAGT---GGAT 19263 | ||| ||| |||| ||| | | ||| ||| | ||| || | |||| Sbjct 6672 T----GGTGGACATGCAGTTCAAGTTATCGGTGATAAGTGGTTACCAGATGTTTCAGGAT 6727 Query 19264 CAACAGTTTATCCACTTTACTATGGAGATATGTCACAAGCTATTACATTGTTTGACCGTG 19323 || |||| ||||||| || || | |||| |||||| || | ||||||| Sbjct 6728 CA------CATCCGCTTTACTTCGGTGACCTAAAGCAAGGTATTACTTTATATGACCGTC 6781 Query 19324 AAAACATGTC-ATTACTTCCAACAAATATTGGTGCTGGTGCATTTGAAACTGATACTACT 19382 ||| ||||| |||| ||||||||| ||||| | ||| ||||||||||||||||| ||| Sbjct 6782 AAAGAATGTCTGTTAC-TCCAACAAACATTGGAGGTGGAGCATTTGAAACTGATACAACT 6840 Query 19383 AAAATTCGTGTAATCGATCGCTTCGATGTTAAA 19415 || || || | || ||||| || || ||| || Sbjct 6841 AAGATCCGCTTTATTGATCGGTTTGACGTTGAA 6873 >seq7019 Length=1056 Score = 80.6 bits (88), Expect = 6e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 23977 GGAGAAAAAGTTGCGGAAGTAACGAAAAATGTTGCTCAAATGCAAAAAGATGGGGCTCA- 24035 || |||||| | ||| || || ||| | ||||| ||||||| |||||||| | || Sbjct 1052 GGTGAAAAAACTAAGGACGTTACTAAAGAAGTTGCAGAAATGCAGAAAGATGGT-CGCAG 994 Query 24036 ATACTCTGTAGAATATGGTAAATCGCAAAAAGAAATTGCAGAAGGTTATCAAGAACTTAT 24095 ||| || | |||||| |||||||| || | ||||| ||||||||||||||| | || Sbjct 993 ATATTCAATCCAATATGCCGAATCGCAACAAAACATTGCGGAAGGTTATCAAGAATTAAT 934 Query 24096 TAAACGTGGATAT 24108 || ||||| ||| Sbjct 933 CAAGCGTGGTTAT 921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116974561385016