Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07]
7,946 sequences; 230,485,475 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq1955 86.0 5e-12
>seq1955
Length=5322578
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||||||||| | || ||||| | || | ||||| || ||||| ||||| ||||| |
Sbjct 1861255 TTCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG 1861314
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| ||| | | || || ||||||||||| ||| | || | || |||||||| |
Sbjct 1861315 AGA--GTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAG 1861372
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | || ||||| || ||| || |||||| | | | || || || ||
Sbjct 1861373 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAA 1861432
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | ||||||||||| || || | |||||||||||| ||||||||
Sbjct 1861433 CTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| || | | || |||| || | |||||||| ||||||||||||||||| |
Sbjct 1861027 TTCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTG 1861086
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| ||| | | || || |||||||| || ||| |||| | | |||||||| |
Sbjct 1861087 AAAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTG 1861146
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | || ||||| || ||| || |||||| | | | || || || ||
Sbjct 1861147 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAA 1861206
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
||| | || || ||||| || || | |||||||||||| |||||||||
Sbjct 1861207 CTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414532651992724
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |