Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq878 123 2e-23 seq1955 111 1e-19 seq7885 104 1e-17 seq2112 95.1 8e-15 seq182 82.4 5e-11 >seq878 Length=1131996 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || |||| || ||||| ||||| ||||||||||| ||||| ||||||||| Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || || || || | ||| |||||| ||| || || | |||||| || | || Sbjct 558585 AATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 558526 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| |||||| ||| ||| || || || | ||| Sbjct 558525 ATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 558466 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 ||||||||||| ||||| || || | ||||| || || || |||||| |||| Sbjct 558465 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTAT 558413 >seq1955 Length=5322578 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| || ||||| | ||| || || ||||| ||||| ||||| || | | | | || Sbjct 1861497 CAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGTTCTTCCATC 1861556 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || ||||| || ||| ||| || |||||||||||||| | ||| || |||||||| || Sbjct 1861557 TTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCCTTCTTTGTC 1861616 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 |||| ||| ||||| ||| || ||||| | || ||| || || || || Sbjct 1861617 TTGAATCTTAGCC---TTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGAT 1861673 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| ||||||||||| || || |||||||| Sbjct 1861674 AGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 109 bits (120), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||| | || ||||||||||| ||||||||||| || | ||||| Sbjct 1861041 CGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAA----GAGTTCT 1861096 Query 33215 T-CATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | |||| ||| || || ||| ||| || ||||||||||| || | || || ||||| Sbjct 1861097 TCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTC 1861156 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || |||| |||||| ||| || ||||| | || ||| || ||||| Sbjct 1861157 TTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGT 1861216 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| || |||||||| || || |||||||| Sbjct 1861217 GATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/217 (70%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 ||| |||||||||| ||| || |||||||| ||||||||||| | | | ||| || Sbjct 1860588 CAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAAA----GTGTTCTTC 1860643 Query 33217 -ATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTT 33272 ||| ||| ||| || ||| ||| || || |||||||| || | || || ||||||| Sbjct 1860644 CATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTT 1860703 Query 33273 TTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | || |||| |||||| | | || || || | || ||| || || || | Sbjct 1860704 TATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAA 1860763 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || ||||| ||||||||||| || || || ||||| Sbjct 1860764 TAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 >seq7885 Length=810 Score = 104 bits (114), Expect = 1e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || |||||||| ||||| ||||| || | | | | || || ||||| |||||| Sbjct 551 GTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCA 610 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | || ||||| | || || |||||||| || ||| |||| Sbjct 611 GCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTT 670 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| || ||| | || ||| |||||||| || ||||| |||||||||||| Sbjct 671 ACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTT 730 Query 33353 TTTACGAAAATTTGCAT 33369 || || ||||||||||| Sbjct 731 TTAACAAAAATTTGCAT 747 >seq2112 Length=2858 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||| ||||| || | | || || || ||||| |||||| Sbjct 361 GTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCA 302 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || || | || ||||| | || || ||||| || || ||| |||| Sbjct 301 GCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTT 242 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| ||| || ||| | || ||| || ||||| || ||||| ||||| ||||| Sbjct 241 ACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTC 182 Query 33353 TTTACGAAAATTTGCAT 33369 || |||||||||||||| Sbjct 181 TTGACGAAAATTTGCAT 165 >seq182 Length=1849075 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 ||||||| ||||| || || |||||| | || || || |||||||||||| ||| | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | | |||||| || || | ||||| |||||||| || ||| ||| || ||| Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 || || || | || || || ||||| || ||||| ||||| | |||||| || | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 33360 AAATTTGCAT 33369 | || ||||| Sbjct 123021 ATATCTGCAT 123030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318746728979508