Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq7885 102 7e-17 seq878 98.7 8e-16 seq1955 95.1 1e-14 seq3153 86.0 5e-12 seq2112 82.4 6e-11 >seq7885 Length=810 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || ||||||||||| || || |||||| | ||| | |||||| ||||| Sbjct 544 ATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTG 603 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| | || | |||||||| ||| || | ||||||||||| |||||| Sbjct 604 TTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTT 663 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| | |||| || ||| ||||| ||||| ||||| || || Sbjct 664 GGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGT 723 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 | ||||| |||||||||||||| Sbjct 724 AAGAGTTTTAACAAAAATTTGCAT 747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || | || || ||||||||||| ||||||||||| || || |||| | Sbjct 64 TTCCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAAT--C 121 Query 20040 CCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | | ||| | || |||||| | ||||| || ||| |||| | ||||| ||||| Sbjct 122 CGAAAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGG 181 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | ||||| || || |||||| ||| || | ||| | ||| || ||| Sbjct 182 TGGAATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTC 241 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 242 AACTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAAT 20062 ||| || || |||||||| || ||||| ||||| | | ||| | || |||||| ||| Sbjct 317 ATGAAGAGTTGATTCTTTCTGGATGTTATAATC--CGAAAGTGTACGACCATCTTCTAAT 374 Query 20063 TGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATT 20122 ||||| || ||| | || || ||||||||||| || | ||||| || || |||| Sbjct 375 TGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATT 434 Query 20123 TTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCG 20182 || || || | ||| || |||| || ||| |||| || |||||||| || Sbjct 435 TTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGTTTT-CCC 493 Query 20183 GTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||| || ||||||||||| Sbjct 494 GTAAGAGTTTTAACGAAAATTTGCAT 519 >seq878 Length=1131996 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 ||||||||||||||| || ||| |||| | |||||||||||| || | |||||||| Sbjct 558802 ATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTT 558743 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 || |||||| ||| || | ||| || ||| || ||| ||| | ||||| Sbjct 558742 ATCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAAT 558683 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || || | |||||||||||||||||||||| Sbjct 558682 CGTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCATT 558646 >seq1955 Length=5322578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | |||||||| ||||| ||||||||||||||||| || || |||| | Sbjct 1861255 TTCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAAT--C 1861312 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| | ||||| || ||| | || | | || ||||| | Sbjct 1861313 TGAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAG 1861372 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||| || ||| || | | | | || || ||| Sbjct 1861373 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAA 1861432 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | |||||||||||||| || | ||||||||||| |||||||| Sbjct 1861433 CTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||| || | ||||| |||||||| ||||||||||||||||| || |||||||| Sbjct 1860573 TCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 1860632 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | ||| | |||||| | ||||||||| ||| |||| | | || ||||| || Sbjct 1860633 AAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | |||||||| || ||| || ||| || | | | | ||| || ||| Sbjct 1860693 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAAC 1860752 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| || || || || | ||||| ||||| || |||||| Sbjct 1860753 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 >seq3153 Length=1268 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| | || || || ||||| ||||||||||||||||| || |||||||| Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||| || ||| | || | | |||||||| || Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||| || || | | | || ||| || ||| | Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || |||||||| || || | ||||| |||||||| ||||| Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq2112 Length=2858 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | | ||| || | ||| ||||||||||||||||| || || |||||| Sbjct 165 TTCCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGG 106 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||||||||| || ||| |||| | || |||||||| | Sbjct 105 AAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAG 46 Query 20100 GCACGCCTTCTTTGTCGGCAATTTT 20124 | | ||||||||||| |||||| Sbjct 45 GAATACCTTCTTTGTCTTGAATTTT 21 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTTCCAATT 20063 || || || ||||||||||| || || |||||| | ||| | | |||||| |||| Sbjct 367 TGAAGAGTCGATTCTTTTTGAATATTATAATCGG--AAAGTGTACGTCCATCTTCTAATT 310 Query 20064 GTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTT 20123 |||| || ||| | || | |||||||| || || | ||||| ||||| ||||| Sbjct 309 GTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTT 250 Query 20124 TTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGG 20183 || ||| || | ||| | |||| || ||| ||| | ||||| ||||| || | Sbjct 249 TTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCG 190 Query 20184 TCAACGTTTTGACAAAAATTTGCATT 20209 | | || ||||| |||||||||||| Sbjct 189 TGAGAGTCTTGACGAAAATTTGCATT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419546566388826