Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2024 98.7 9e-16 >seq2024 Length=8919894 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 |||||||| |||||||||| | ||||| || |||||||| || || || || ||| Sbjct 2395963 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 2396022 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | | ||||||||| ||||| | || ||||| | || ||||||||||| | || ||| Sbjct 2396023 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 2396082 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 || | ||| || || ||| || | | | | ||||| | | | || ||| || | Sbjct 2396083 ATTTTAACAGCATCCTTAATAATTGATGTAACT-CGTTCAC--AAGATGGTTTTTGTACA 2396139 Query 13136 ---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCC 13173 || || ||||| | ||||||||||||||| || ||||| Sbjct 2396140 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2396180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| || ||||| || || || ||||||||||||||||| ||||||||| || | ||| Sbjct 2396610 AATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTG 2396669 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 |||||||| ||||| | ||||||| || || ||||| || | ||||| ||| | | Sbjct 2396670 AAAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACT-AAATCGTTCAACAA 2396728 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC-AAG-TATGTGCTTAATAAA 13596 || || || || || || ||| || |||||||| || ||| ||| | | ||||| Sbjct 2396729 GATTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGAT--ATAAA 2396786 Query 13597 ttttttttC 13605 | |||||| Sbjct 2396787 ATGTTTTTC 2396795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAAC-TCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||||| | || | |||||||||| |||||||| || |||||||| ||||||| Sbjct 2395762 TTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATAT 2395821 Query 12918 TTTCCATAAAATCGAAAGGATTTT 12941 |||||| ||||| || ||||||| Sbjct 2395822 GTTCCATGAAATCAAACGGATTTT 2395845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430940662856292