Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005354.1 Length=38384 Score E Sequences producing significant alignments: (Bits) Value seq4744 176 1e-39 >seq4744 Length=1121 Score = 176 bits (194), Expect = 1e-39 Identities = 487/734 (66%), Gaps = 21/734 (3%) Strand=Plus/Plus Query 5753 TTTAATTTTGAAAATCAACAAGTTAGAACTTTGACAGTTGATGAAGAACCATATTTTGTT 5812 ||||| ||||| || ||| | || ||||| |||| | |||||||| || |||||||| Sbjct 74 TTTAACTTTGATAACCAAAAGGTAAGAACCATGACCATCGATGAAGAGCCTTATTTTGTG 133 Query 5813 GGTAAAGATGTAGCAACTA-TTCTTGGATATAAGAATGGTAGTAGAGATATAAATACTCA 5871 | || ||||| |||| | ||||||| || || || || | | || | || Sbjct 134 GCCAATGATGTTGCAAAAAATTCTTGGCTACAAAAAAACAAGAAATGCGATTGCCAGACA 193 Query 5872 CGTTGACGAGGAAGATAAGCTG-AGGTACCAAATCAGTACCGCA--GGTCAGA-TGAGAG 5927 ||||| ||| ||||| | | | ||| |||| || | ||| | | | | Sbjct 194 TGTTGAGCTGGATGATAAAAAGGACGCCCCAGTTCAGGGCCCCCTTGGTGGAACTCAAAA 253 Query 5928 ATCAAATATTAATTAACGAATCAGGATTGTACAGTTTGATCTTATCA--AGTAAGCTTCC 5985 | | | | |||||||||| || || | || || || || ||| | || || | || Sbjct 254 AGCTAC-AGTAATTAACGAGTCTGGTCTCTATAGCTTAAT--TATGAGTAGCAAAATGCC 310 Query 5986 CAATGCTAAAAAGTTCAAACGATGGGTTACTTCAGAAGTTCTTCCAGCAATTCGCAAACA 6045 | ||||| | ||| |||| |||||||| || || | ||||| ||| | | || Sbjct 311 TGAGGCTAAGAGGTTTAAACATTGGGTTACAAGTGAGGTATTACCAGCTATTAGACAGCA 370 Query 6046 CGGTGCATATATGACTGACGAAAAAGCATTCGATGTAGTCCGTAACAAGACCGGGTTAGC 6105 || || || | |||||| | ||||| || ||| | | ||||||| ||| |||| Sbjct 371 TGGAGCGTACCTTACTGACCAGAAAGCCTTGGATATTATTACTAACAAGGACGGCCTAGC 430 Query 6106 TGACTTACTTCAACAAGCAGCGGATCAGCTTAAACAAAAAGATATTGAAATT--GCTGAA 6163 || | | ||| | ||||| || || |||||| ||||||||||||| ||||| || | Sbjct 431 TGGCCTGCTTAAGCAAGCTGCTGACCAGCTTGAACAAAAAGATATCCAAATTAAGCGG-- 488 Query 6164 ATGAAACCTAAGGCATTGTTTGCAGATTCAGT---AGCAACTAGCCACACTACAATTTTG 6220 || ||||||| || | ||||||||| |||| ||||| | ||||| || || Sbjct 489 TTGGAACCTAAAGCTCTATTTGCAGATACAGTTTCAGCAAGTGATGACACT---ATCTTA 545 Query 6221 ATTGGCGAGTTGGCCAAAATTTTAAGAGGTAATGGAATAGATATTGGAGCTAATCGTTTG 6280 |||| || | ||||| ||||| | ||| || || || ||||||| ||| | | Sbjct 546 GTTGGTGAACTTGCCAAGATTTTGAAAGGCAAAGGTGTAAATATTGGCCAAAATAGGCTT 605 Query 6281 TTTGCTTGGATGCGAGAACATGGATATCTGATCAATCGTAAGGGTAGTGATTGGAACATG 6340 ||| |||||||| || |||| ||| |||| || || | ||| ||||| | || | Sbjct 606 TTTAAGTGGATGCGTGATAATGGCTATTTGATAAACCGGAGGGGCAGTGACCGCAATGTT 665 Query 6341 CCAACGCAGAAATCAATGGATCTTGGTTTGTTCAAGATCAAAGAAACAACGATTAACCAT 6400 || || || || || ||||| | || | ||| |||| ||||||||| || || ||| Sbjct 666 CCGACTCAAAAGTCTATGGAAATGGGACTATTC-AGATTAAAGAAACAGTAATCAATCAT 724 Query 6401 TCAAACGGTTCAACATCAATTAGCAAGACACCTAAGGTAACAGGTAAGGGGCAACAGTAT 6460 | | ||| || ||||| ||||| || || ||||| ||||| || || | ||| Sbjct 725 CCTGATGGTAAGCCAAGTATTAGAAAGACGCCAAAAGTAACTGGTAAAGGCCAGCGCTAT 784 Query 6461 TCTGTTAATAAGCT 6474 | ||| || ||||| Sbjct 785 TTTGTGAACAAGCT 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122695621501992