Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1395 150 2e-31 seq1883 141 1e-28 >seq1395 Length=2354079 Score = 150 bits (166), Expect = 2e-31 Identities = 218/305 (71%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| ||||| || |||||||| | |||||||| ||| ||||||| || |||||| Sbjct 218079 ATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTACTGCTATTTTTC 218020 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||| ||||| || || |||| || || | | | ||||||| ||||||| Sbjct 218019 GAAGAGCCTTTGCATCACGAGTTTTTCCGCCAGAGATTGTTACACAATTAGGTTGTAAAC 217960 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||||||| | |||| || || || || ||||||||||||||| || Sbjct 217959 ATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCTAGAC 217900 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | | ||||| | | || || |||||| |||||||| ||| || | | Sbjct 217899 AAATAG-GAACTATGTTAAATGCTAGAGAACC--TAAAATCGTTAATGGCCCTCAAATCT 217843 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | ||||||||||| || ||||| ||| |||||| || ||| || ||||||| Sbjct 217842 TGGATAAATATGTAGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCTGAAG 217783 Query 164690 AAGAA 164694 ||||| Sbjct 217782 AAGAA 217778 Score = 129 bits (142), Expect = 7e-25 Identities = 156/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT-- 164772 |||| ||||||| | ||| |||||||||| || |||||| |||| || || ||| Sbjct 217689 TAGTGGATTACATATAATTATTTTTGATGAAATTGATGCTATTTGTAAGTCTCGAGGTAG 217630 Query 164773 -------GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 | ||||| |||||||| | || || ||||| || ||| | ||||| || Sbjct 217629 TGTGGCTGGTAATACAGGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGA 217570 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||||||| |||||||||||| | || | |||||||| || ||| ||| | || Sbjct 217569 TGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGAT 217510 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 ||||| |||||||||||||||||| ||||||| Sbjct 217509 AGATGAAGCTTTATTACGACCTGGTAGATTAGA 217477 >seq1883 Length=454209 Score = 141 bits (156), Expect = 1e-28 Identities = 174/237 (73%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | || |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 61275 TATATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTT 61216 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTT----TGATCCATAAGCATCCCAA 7290 | | || |||| || | || ||| || | ||| | || ||||||||| Sbjct 61215 CCCTATCTGTAAAACCACAAGAATCTAA----GAACTCACGTGAACTATTCGCATCCCAA 61160 Query 7291 ATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAA 7350 ||||| ||| |||| ||| ||| || |||||| ||||| |||| ||||||||| Sbjct 61159 ATATGAACATCCTTTTCGCTTAATTTTTTAGCATTTGTGGATCCATTAATGAACCATAAT 61100 Query 7351 AGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAATGTA 7407 | |||||| |||| || |||||| | | ||||||||| ||||| || ||| || Sbjct 61099 AATTCTTCCACTACACCTTTCCAAAATACGCGTTTTGTAGTTAATAATGGAAATATA 61043 Score = 114 bits (126), Expect = 2e-20 Identities = 172/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 6914 TTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTT 6973 ||||||| | |||||| || | |||||| |||||||| | |||||||| || ||||| Sbjct 61618 TTAATAAAGAATAAGATGCAATATTAAATGGTACACCAAGACCCATATCCGCACTTCTTT 61559 Query 6974 GATAACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAATTGACACAATAC-ATGA 7029 ||||| ||| || ||||| |||| || ||||||||||| |||| || |||| Sbjct 61558 GATAAAGTTGGCATGATAATTCTTCATTGCTTA---CATAAAATTGA-ACAAAACAATGA 61503 Query 7030 CATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCAAGCAGTCATTAAAATA 7086 || |||||||| |||| | | |||||| ||||||||| || ||||||| ||| Sbjct 61502 CAAGGAGGTAA---AGCCATTTTTGGAATATCAATTGGATTCCATGCTGTCATTATAATT 61446 Query 7087 CGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACC 7145 | ||||||||| ||| | || || ||||| | || ||||||||| ||||| Sbjct 61445 CTTCTATCATTGGGAGAATATCGTATCTTATCTATAACTTCTTTTAATTGATCAATACC 61387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595812815013600