Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq621 336 1e-87 >seq621 Length=3205890 Score = 336 bits (372), Expect = 1e-87 Identities = 440/601 (73%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 3551 GCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTATTTACACGATTGAATG-A 3609 ||||| |||||||| || || ||| ||| ||||| | ||||| ||| ||| | Sbjct 2131107 GCTGTTAAAATGGCTAATATAGATAGAGCATGTAATTTTATGTTTACT-GATCGAAAACA 2131049 Query 3610 T---GGATCAAATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAG 3666 | ||| |||||| ||| |||||||||| |||||||||||||| |||||||||||||| Sbjct 2131048 TTTGGGAAAAAATGAGTTGTTATATTTTGCAGACGTATGCGCTGGACCAGGTGGTTTCAG 2130989 Query 3667 TGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGa 3726 ||||||| | | ||||||| |||||| || ||||| | |||| | || || | | Sbjct 2130988 TGAATATGTTCTTTGGAGAACAAAATGGCATGCTAAAGGGTTTGGTTTTACATT--GAAA 2130931 Query 3727 aa--aaaaTGATTTTCAACTGAACAGA-TTTTACGATAACTTTTCGGAAACTTTACACCC 3783 || ||||||||||| || | | | || ||||| | | | | | ||||| || || || Sbjct 2130930 AATGAAAATGATTTTAAATT-AGCTGACTTTTATGCTGGTTCTCCTGAAACATTTCATCC 2130872 Query 3784 GTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTG 3843 |||||||| || | ||||| || ||| |||| ||||||| | | ||| | Sbjct 2130871 ATATTATGGACCAAAAGATAATGGTGATGTCTTTGATTCTGAAAATCAAAGAACATTTAG 2130812 Query 3844 TGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGG 3903 ||| | || |||||| | || | ||||| ||||||||||||||| |||| ||||| Sbjct 2130811 AGAACTTATAATGAAATACACTCATAATAAAGGAGTACATTTTATGATGTCTGATGGTGG 2130752 Query 3904 GTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTG 3963 ||||| |||||||| ||||||| | |||||||| | || ||| | ||||| | || Sbjct 2130751 TTTCTCTGTTGAGGGAAAAGAAAACTTACAAGAAATTCTTTCAAAACAATTGTATCTTTG 2130692 Query 3964 TCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTT 4023 ||||||||| | ||||| ||||| || || ||||||| ||||| ||||| || Sbjct 2130691 CCAATGTTTAGTAGCATTAATGATAGTAAGAGAGAAAGGTCATTTTGTTACAAAATTATT 2130632 Query 4024 CGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCG 4083 ||||||||||||||||||||||| |||||| | ||||| |||||| ||| |||| | Sbjct 2130631 TGATATATTTACACCTTTTAGTGCAGGTTTAATCTATTTAATGTATCGATGTTTTGACGA 2130572 Query 4084 TATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTG 4143 ||||||||||| |||||| | || || |||| || ||||| ||| | |||||| | || Sbjct 2130571 AATTTGTATTTTTAAACCAAACTCTTCTAGACCAGCAAATTCAGAACGTTATTTGATATG 2130512 Query 4144 T 4144 | Sbjct 2130511 T 2130511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276526818030838