Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1560 118 6e-22 seq596 118 6e-22 seq1955 113 2e-20 seq835 111 8e-20 seq12 111 8e-20 seq1561 107 1e-18 >seq1560 Length=4276380 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 2818501 AAAAAAGAATACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 2818560 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 2818561 GCTCTAACCAACTGAGCTAATGGGCCG 2818587 >seq596 Length=4103984 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1406647 AAAAAAT-AATTTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 1406589 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1406588 GCTCTAACCAACTGAGCTAATGGGCC 1406563 >seq1955 Length=5322578 Score = 113 bits (124), Expect = 2e-20 Identities = 80/91 (88%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||| || || ||||||||| |||||||||| ||||||||||||||||||| Sbjct 4523816 TAATATAAAAAAAATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 4523875 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||| |||||||||||||||| Sbjct 4523876 ACGACGCTCTAACCTACTGAGCTAATGGGCC 4523906 >seq835 Length=2977560 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 2870518 AAATTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 2870577 Query 11512 CAACTGAGCTAATGGGCC 11529 | |||||||||||||||| Sbjct 2870578 CTACTGAGCTAATGGGCC 2870595 >seq12 Length=4649 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 3875 AAAAAAAAAAATATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 3934 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 3935 GACGCTCTAACCAACTGAGCTAATGGGCC 3963 >seq1561 Length=5220439 Score = 107 bits (118), Expect = 1e-18 Identities = 77/87 (89%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 42614 AAAAAA--AAATCTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGA 42671 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||| |||||||||||||||| Sbjct 42672 CGCTCTAACCTACTGAGCTAATGGGCC 42698 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465876701896