Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2440 188 1e-43 >seq2440 Length=2833704 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||||| |||||||||||||| ||||| || |||||||| Sbjct 1228343 GCAAAGCGTCATAGAAAGGTACTTCGTGATAACATCCAAGGTATCACAAAACCAGCTATT 1228284 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || || ||| | ||||| || | |||||||| | | Sbjct 1228283 CGTCGATTGGCTCGTCGTGGCGGTGTTAAACGTATATCTGGTTTAATTTATGAAGAAACT 1228224 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | | | ||||||| ||||| | || ||||| Sbjct 1228223 CGTGGTGTTTTGAAAGTTTTCTTAGAAAATGTTATCCGCGATGCAGTTACTTACACCGAA 1228164 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || ||||| || | |||||| |||| ||||| ||||| | ||||| Sbjct 1228163 CACGCCAAACGAAAAACTGTAACGGCTATGGATGTCGTATATGCTCTGAAAAGACAAGGA 1228104 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||||||||||||| ||||| Sbjct 1228103 CGTACTCTTTATGGTTTTGGAGGTTAA 1228077 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | | || |||||||||||||| || ||||| ||||| || Sbjct 1946186 GCAAAGCGTCATAGAAAGGTTTTGCGTGATAACATCCAAGGTATTACCAAACCAGCCATT 1946127 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || |||||| | ||||||||| |||| ||||| | Sbjct 1946126 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATTTCTGGATTGATCTACGAAGAAACA 1946067 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| | ||| | | | ||||||| ||||| || || || || Sbjct 1946066 CGAGGTGTATTGAAGGTATTCTTGGAAAATGTTATCCGAGATGCCGTCACTTACACTGAA 1946007 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | |||||||| || |||||||| | || || || ||||| |||||||| Sbjct 1946006 CATGCCAAGAGGAAGACTGTAACTGCCATGGATGTAGTTTACGCTTTGAAGCGTCAAGGA 1945947 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||| |||||||| |||||| Sbjct 1945946 AGAACCCTTTACGGTTTTGGTGGTTAAT 1945919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067934916578