Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2024 104 2e-17 >seq2024 Length=8919894 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| ||||| | |||||| || || | ||||| || || ||||| | |||||| Sbjct 2396634 ATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAGAAACAACGTGCCTC 2396693 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 || ||| || || | |||||||| | | | || ||||| || ||||||||| Sbjct 2396694 TGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACAATTCCATCAGA 2396753 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| || | || |||||||| | ||| | | ||||| || || Sbjct 2396754 TGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTTTCACTGGCAGTTAAATTATT 2396813 Query 21949 CCAATCTAATAAATC 21963 |||||| |||| ||| Sbjct 2396814 CCAATCAAATACATC 2396828 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 21281 TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATT 21340 || |||||||| | |||| | |||||||||||| |||||||| |||||||||||||| Sbjct 2395963 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 2396022 Query 21341 AATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT 21400 | || ||| ||||| || |||| || ||||| | || | ||| ||||| || ||| Sbjct 2396023 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 2396082 Query 21401 ATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGG-----ATACA 21455 || || || || ||| ||| || || | | || || || |||| Sbjct 2396083 ATTTTAACAGCATCCTTAAT--AATTGATGTAACTCG-TTCACAAGATGGTTTTTGTACA 2396139 Query 21456 ATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 || ||||| ||||| |||||||||||||||||||| || || Sbjct 2396140 AT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCC 2396180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/157 (75%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttt---tGACATAATTCCCAT 21183 |||||| ||||||| ||| || ||| |||| ||| || | | ||| | |||| Sbjct 2395705 TTAAAATTCAGCAT-TAAC-AGTAAA-ATTACTTTCAATTCTATCTTGCATTACTCCCCA 2395761 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAA-TTTGTCTTTCCTTCCAATGATATAG 21242 ||||||||| || | ||| |||||| ||| || |||||||| ||||| || || ||| Sbjct 2395762 TTTTTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATAT 2395821 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||| |||||||| ||||||||||| || |||| Sbjct 2395822 GTTCCATGAAATCAAACGGATTTTCAGACATATATAT 2395858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531847968953040