Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_007052.1 Length=45861 Score E Sequences producing significant alignments: (Bits) Value seq1016 365 1e-96 >seq1016 Length=4402 Score = 365 bits (404), Expect = 1e-96 Identities = 670/969 (69%), Gaps = 16/969 (2%) Strand=Plus/Minus Query 25891 TATCACCGTTGAAAATAGAGTTTCTAACAATAACATAATCTACAGTACGTAAT-GATTTC 25949 |||||||| | | ||| | |||| |||| ||||||||||| ||| | |||| || | Sbjct 1654 TATCACCGCTCATAATGGTGTTTTTAACGATAACATAATCAACAAG-CTTAATTGAACT- 1597 Query 25950 AAGTCTTTT-CCACCGGCATATGAAATTGAGCTTTGTAAATCTTGTTGCATTTCTTTTAA 26008 ||| |||| ||||||||||| || || || ||| || |||| |||||||| | || Sbjct 1596 AAGCGTTTTACCACCGGCATAAGAGATAGAAGATTGCAAGTCTTCCTGCATTTCGGTCAA 1537 Query 26009 GGTATCCATTAATGACCCCTTATGTTCTACAAACAtttttttACCTTCTACATTTTTATG 26068 ||||| | ||| ||| | | ||||| ||| | |||||| || ||||| | Sbjct 1536 AGTATCAGCAATTGAGCCCCGGTATGGTACAAGCATCTGTTTACCCTCAACATTGCGGTA 1477 Query 26069 TTCGCCTTTTTGAAATTCAGATGCACTACCAAAATATTCTTTATACTGTTTACCATCAAG 26128 | |||||||||| ||||||||| || |||||| || || |||||| |||| Sbjct 1476 GGCTCCTTTTTGAACTTCAGATGCGGAGCCCCAATATTGCTTGTAGGTTTTACCGTCAAT 1417 Query 26129 TTCTACAGTTTCACCAGGTGATTCTTCGTGTGCCGCAAATAATGAACCAATCATGACCAT 26188 | | | | ||| || ||||||||||| | || | | |||||||||||||||||| Sbjct 1416 CTTAATAACGTTACCTGGGGATTCTTCGTGACCAGCTAGCATTGAACCAATCATGACCAT 1357 Query 26189 TGATGCACCAAATCTAATTGACTTAGCGATGTCGCCATGCGTTCTTATGCCACCATCGGC 26248 || ||||||||| | || || || || || ||||| | | || || ||||| || Sbjct 1356 TGTTGCACCAAAGCGAACAGATTTTGCTATATCGCCGTTATAACGGATACCGCCATCAGC 1297 Query 26249 AATCAAAGGTTTACGAGCTGCTTTACTACATATGTTTAATGCCGCTAACTGCCAACCACC 26308 || | ||||| | || ||||||| || || | | || |||| |||||| ||||| Sbjct 1296 GATTAGTGGTTTGCTGGCAACTTTACTGCACATTCTAAGAGCAGCTAGCTGCCAGCCACC 1237 Query 26309 AGTACCAAAACCTGTTTTAATCTTTGTAATACAAACTCTACCAGGACCTATACCGACTTT 26368 |||||||||||| ||||||| || |||||||| | | |||||||| | ||| ||||| Sbjct 1236 AGTACCAAAACCGGTTTTAAGTTTGGTAATACATGCACGTCCAGGACCAACACCAACTTT 1177 Query 26369 GGTAGCATCAGCACCAGCATTTTCTAATTCTCTAACACCTTCTGGCGTACCAACATTACC 26428 |||||||||||||||||| ||||||| ||| | |||| |||||||||| ||| || || Sbjct 1176 GGTAGCATCAGCACCAGCGTTTTCTAGTTCACGAACAGCTTCTGGCGTGGCAATGTTTCC 1117 Query 26429 AGCAATAACAAAACTATCAGGTATATGGGTTTTAATATGTTTAATCATGTTTATCACTGA 26488 || | | ||| |||| |||| | |||||| | ||||||||||| || || | Sbjct 1116 CGCGGTTAAGAAAGTATCTGGTAATTTTTCTTTAATGTATTTAATCATGTCAATGACATA 1057 Query 26489 ATCTGAGTGACCATGCGCAATATCTATTGTAATATATTCGGGGATTAATTTTTCTTGAGC 26548 | || || || || |||| ||| || ||||| |||||||| | | |||||| || Sbjct 1056 GACGGAATGGCCGTGTGCAACATCAATCGTAATGTATTCGGGAACGATTTTTTCAGCTGC 997 Query 26549 TAACTTTTCAATAAAATCAAATTCCGCTTTCTTTACACCAACTGAAATAGATGCAAATAA 26608 ||| | |||||||| | | |||| | ||||| | ||| || ||||| || ||||| | Sbjct 996 TAATTGATCAATAAAGTTATATTCGTCCTTCTTAATACCGACAGAAATTGAAGCAAAAAG 937 Query 26609 GCCTGAATTTTGCATATGTTTTATAAAAGGTATTCTTGCTTCTTCA---TCAAAACGATG 26665 |||| | ||||| ||| || ||| | | |||| |||| | ||| || || Sbjct 936 GCCTTTTTCATGCATCATTTTGATGAAATCGAGCC--GCTT-TTCAGGTTGAAAGCGGTG 880 Query 26666 CATGATATAAAAGTAATCATTTTCAGCAAACCATTTCGCTAATTTCTCATTCATAACTGT 26725 ||| | ||| | || | |||| |||| ||| | || || | ||||| || || | Sbjct 879 CATTACATAGTAATAGCCGTTTTGCGCAAGCCAAATAGCCAACTCGTCATTAATGACGCT 820 Query 26726 TTGCATATTTGCAGGAACTACAGGTAGCTTGAATTTTTTCGG--ACCAAATTGGATAGTT 26783 | ||| || || ||||| || || | || || | ||||| ||||| | | | | Sbjct 819 CTCCATGTTAGCTGGAACAACCGGGATTTTAAA--TGTTCGGTTTCCAAACTTAACACTA 762 Query 26784 GTAT-CACATTCTGATCTACTCTCAACTATACATTTATTAGGTATTAATTGAATATCTTC 26842 |||| | ||| ||| | || | | || | ||| ||||| | | ||||||||| || Sbjct 761 GTATCCGCATCATGA-CGGCTTTTGATGATTCCTTTGTTAGGAACAAGTTGAATATCATC 703 Query 26843 ATAGTCAAA 26851 || ||||| Sbjct 702 GTAATCAAA 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146619763836796