Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1883 102 2e-16 >seq1883 Length=454209 Score = 102 bits (112), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 |||||| | | || ||||| || || |||||| || | || |||||| | | ||| Sbjct 61047 TTTCCATTATTAACTACAAAACGCGTATTTTGGAAAGGTGTAGTGGAAGAATTATTATGG 61106 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAA--ATGTAAAAATTTGGG 111432 || ||| ||| |||||||| || || | ||| |||| |||| | ||||||| Sbjct 61107 TTCATTAATGGATCCACAAATGCTAAAAAATTA--AGCGAAAAGGATGTTCATATTTGGG 61164 Query 111433 ATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTG 111492 ||| ||| | |||||||| || ||||||| |||| || || | |||||||| | Sbjct 61165 ATGCGAATAGTTCACGTGAGTTCTTAGATTCTTGTGGTTTTACAGATAGGGAAGAAGGAG 61224 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || | || || |||| |||||||||||| | || ||||||||| Sbjct 61225 ATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCA 61268 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 111633 ATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCAT 111692 ||||| |||| |||||||| |||| || | ||||||||| | || || |||||| Sbjct 61447 ATTATAATGACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGTCAT 61506 Query 111693 C-TTATGTGCCAGTTTTATGTACACGACG--GGATGCTTTCATGCCAAATGTATCAGCGA 111749 || ||| | | ||||||||| | | | | || | ||||||||| | ||||| || Sbjct 61507 TGTTTTGTTCAA-TTTTATGTAAGCAATGAAGAAT--TATCATGCCAACTTTATCAAAGA 61563 Query 111750 TCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||| ||||| ||||||||||| || |||||||||||| Sbjct 61564 AGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCA 61602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303220908013772