Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_007501.1 Length=36466 Score E Sequences producing significant alignments: (Bits) Value seq6632 338 1e-88 >seq6632 Length=1117 Score = 338 bits (374), Expect = 1e-88 Identities = 411/556 (74%), Gaps = 3/556 (1%) Strand=Plus/Minus Query 29360 CAATTAATGAGATCGCTAGAACTGTTTGCAGGAATCGGTGGCATCGCATTGGCTGAACAA 29419 |||| |||| | | |||| || ||||| ||||| ||||| || || | || |||||| Sbjct 560 CAATATATGAAAGCATTAGAGCTATTTGCTGGAATTGGTGGAATTGCTCTTGCAGAACAA 501 Query 29420 ATGGCTGGCATTGAAGTGGCCGGTTTGTGTGAGTATGCAGACTACCCGCGCGCGATTTTA 29479 ||||| || ||||| || | ||||| | || | |||||| || | ||||||| Sbjct 500 ATGGCAGGGATTGAGGTTGTTGGTTTATCCGAAATCGAAGACTATCCTGTCAGGATTTTA 441 Query 29480 CAGAAGCACTGGCCAGATGTGCCACTTTTTAAGGACGTGACAAAACTTGATCGAGAAGAA 29539 | ||| ||| |||||| | ||| || | || || || | |||| || | | | || Sbjct 440 AAAAAGAACTTTCCAGATATACCAATTCTGAAAGATGTTAGAAAAATTAA-CAAAAAACG 382 Query 29540 CTCACAAATGCAGGGATCAGCCCTGACTCAATTGACATTGTTTCCGGAGGATTCCCTTGC 29599 | | | | ||| || ||| ||| ||||||||||| |||||||||| ||||| || Sbjct 381 TTAAAGGAGGTAGGCATTGACCCAGACACAATTGACATTATTTCCGGAGGGTTCCCCTGT 322 Query 29600 CAGCCTTTCAGTATTGCCGGGAAGCGAAAAGGCACGGAAGATGACCGCGACCTCTGGCCG 29659 ||||| ||||||| |||||| | || | |||||| ||||||||||| ||||||||||| Sbjct 321 CAGCCATTCAGTACAGCCGGGCACCGCAGAGGCACAGAAGATGACCGTGACCTCTGGCCA 262 Query 29660 GAGATGTTTAGAATTATCAAGCAAATCTGGCCAACTTGGGTTGTTGGAGAGAATGTTGCT 29719 || ||||| |||||| |||| || | | |||| |||||| |||||||||||||||||| Sbjct 261 GAAATGTT-AGAATTGTCAAAGAATTAGGCCCAA-TTGGGTCGTTGGAGAGAATGTTGCT 204 Query 29720 AACTTCGCAAATATGGAACTCGACAGAACGCTATCTGACCTGGAAGGCGCGGGATACCAA 29779 |||||||| |||||||| |||||| | ||| ||||| || ||||| || || ||| || Sbjct 203 AACTTCGCCAATATGGAGCTCGACCGTACGTTATCTAACTTGGAAAGCCAAGGCTACGAA 144 Query 29780 GCACGGGCATTTGTACTTCCAGCTTTGGCCGTTGGCGCCCCACATCAGAGGCTTAGAACA 29839 || |||||||||| | |||||| ||| | |||||||||||||| ||||| ||||| Sbjct 143 ACAAGGGCATTTGTTTTACCAGCTGCAGCCATCGGCGCCCCACATCAAAGGCTACGAACA 84 Query 29840 TTCATTGTTGCCCACGCCGACAGCAAGCGACGGGTTTGCGTGGAAAAAGGTAAACAAAGC 29899 |||||||| ||| ||||| | || ||||| | || ||| || || | |||| | Sbjct 83 TTCATTGTGGCCAACGCCAATGGCTGGCGACAGCCAAGCATGGCTGAAAGTGAGCAAAAC 24 Query 29900 GGACGTGATTGGGAGC 29915 || |||||||| ||| Sbjct 23 AGATGTGATTGGAAGC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116558600638256