Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1429 156 5e-33 seq2024 152 7e-32 >seq1429 Length=9113309 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 62099 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62158 || || || ||| || ||| ||||| ||| || || || |||| ||| | | ||| Sbjct 7667341 TGTATAGAGCCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTT 7667282 Query 62159 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 62218 || |||||| ||| | | ||| ||||| || |||||||| ||||| |||| ||||| Sbjct 7667281 TCAGTTAAATCTCGTAATAAATGAGGATTTACAACTTGAAACTCTCCTGACAGAACTCTT 7667222 Query 62219 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 62278 | ||||||||||| ||||| || ||||| | ||| ||||||||||| |||||||| || Sbjct 7667221 CTTGTGTAAATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCT 7667162 Query 62279 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 62329 |||||||| || ||||| ||||| | || ||| |||||||| || ||| Sbjct 7667161 GTTGATGCTGTTGGCATCGGTGCAATTAACAAAGAATTTCTAACTCCATAT 7667111 Score = 152 bits (168), Expect = 7e-32 Identities = 227/315 (72%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || || ||||| ||||||||||| || || | | |||||| | |||||| ||||| || Sbjct 7665259 TTACCAGTATTTTTTTTAAGATCTAGAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 7665200 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 ||||| || | ||||||| | ||| |||||||| ||||| | |||| ||| || ||| Sbjct 7665199 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 7665140 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || ||||| | ||||||||| | |||||| ||| |||| || || || ||| | Sbjct 7665139 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 7665082 Query 63317 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | || || || |||||| | || | | || || || || || || |||| Sbjct 7665081 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTACTA 7665023 Query 63374 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTT 63432 || | |||||||| |||||| ||||| || || || || |||||||| || ||| |||| Sbjct 7665022 ATGAGTGCGCATCTTTTTAATGTATCGTAAATTCCTTCAATACTATCTTCACTCATTGTT 7664963 Query 63433 AAGTAGAAAACAGCT 63447 || || |||||| || Sbjct 7664962 AA-TAAAAAACAACT 7664949 Score = 134 bits (148), Expect = 2e-26 Identities = 269/395 (68%), Gaps = 14/395 (4%) Strand=Plus/Minus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||||||||| ||| || || ||||||||||||||||||||||| | Sbjct 7666676 TACCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCTTCTGGAATAGGATAATAATTGA 7666617 Query 62652 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 ||| |||||||| | |||||| | | |||||| |||| || | | ||||| Sbjct 7666616 CATCGATAATTTTGTCGAGATTACAAGTAACAATT--TTTG-TTACTTTCAGAAGTTTTT 7666560 Query 62709 GAAAATCAAATCGCCCATCTA-------TTACAAACATGTTCAATGCAACAGATGCCAGA 62761 ||||||||||| || || |||||||||| || | |||| || || | | Sbjct 7666559 GAAAATCAAATGTTTGAT-TATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAA 7666501 Query 62762 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62821 ||||| || || || |||| | | | ||| || | | || || || | ||||||| Sbjct 7666500 TTACACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTA 7666441 Query 62822 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 62881 | ||| || ||||||| |||||| ||||| || || || ||| |||||||| Sbjct 7666440 CTCTTTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGC 7666381 Query 62882 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 62941 || ||||||| || ||||||| ||||| | ||| ||| |||| | ||| ||| Sbjct 7666380 ATATATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCT 7666321 Query 62942 TTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA 62976 | ||| ||| ||||| || || |||| || Sbjct 7666320 TGAATTTGTCGTTTATATCTTTTCTCATTTTCATA 7666286 Score = 100 bits (110), Expect = 4e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 ||||||| | ||| || || | |||||||||| | || |||||| |||||| | Sbjct 7665982 GTGTATAAAGAATTTCAAATTCATTGCCCCAAACATCAGCTAGACCAGGAGATTCATGTG 7665923 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||| || | ||| || | |||| |||||||||||||| |||||||| |||| Sbjct 7665922 GACACATTAAAGTCCATATACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 7665863 Query 63099 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 | ||||| ||| |||| ||||| | ||||| ||| || || ||||| Sbjct 7665862 ATAGAGC-ATAGAATAATTCTCTAGCTCTATTTTCTTCTTTACCTGT 7665817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||||||| || | ||||| | ||| ||| | || ||||| || || ||||| Sbjct 7664882 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 7664823 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 7664822 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATA 7664763 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | ||||| || | ||||||||| ||||| ||||||||||| | || | |||||| Sbjct 7664762 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 7664703 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 || || || | |||| | ||||| ||||||||||| || || ||| |||| || Sbjct 7664702 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 7664643 Query 63686 TAAATAAT 63693 ||||| || Sbjct 7664642 TAAATTAT 7664635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||| || || |||| |||| | ||||| |||||||| || || ||||| ||| Sbjct 7666927 CCTTCATAAGTTTCATATGTACCTTTTTCTTCAGCAAGTTCACAGCTGGCTTCTAAAGCA 7666868 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||| | ||||| || |||| |||| || | ||| || || || |||||| Sbjct 7666867 CCATAATACAATGTTTCAAATATCTGAATATTAAGTTTTTGTGCCTCTTCACTTTCAAAT 7666808 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 |||||| | | || ||| || ||||| | ||||||| |||||||| Sbjct 7666807 GGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 7666758 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||| ||||||||||| || ||||| | || | ||| ||||| | || Sbjct 7667612 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 7667553 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||||| |||||| || || || || | ||||| |||||||||| ||| | | Sbjct 7667552 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 7667493 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 ||||||| |||||||||| |||||||||| Sbjct 7667492 TTTGTGGTATTTCCCAAACTGTTTTATAAA 7667463 >seq2024 Length=8919894 Score = 152 bits (168), Expect = 7e-32 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || |||||||| || | | ||||||||| ||||||| ||||| ||||| | |||||| Sbjct 2396614 TACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGAAAA 2396673 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 || ||||| || | ||||| || || ||||||||| || ||||||||| | | ||| Sbjct 2396674 CCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGATTC 2396733 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 ||||| || ||||| ||| ||||||||||| || || ||||| |||||||| |||| Sbjct 2396734 TCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGTTTT 2396793 Query 33111 TCGTCTGG-TGTTAGTTTATTCCAATCA 33137 || |||| |||| |||||||||||| Sbjct 2396794 TC-ACTGGCAGTTAAATTATTCCAATCA 2396820 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 ||||||| | ||| |||||||||||||||||||| ||||| || || ||||| ||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| || ||| | ||||||| ||||||| |||||||||| |||||||| Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 2397008 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 32457 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATAT 32516 ||| ||| |||||| | || ||||| || ||||||||||| |||||||| |||||| Sbjct 2395954 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 2396013 Query 32517 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 32576 ||| | || ||| ||||| ||||| | || ||| || | || | || | |||| Sbjct 2396014 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 2396073 Query 32577 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 32635 ||||||||||| || || || | ||||| ||| | || | ||||| | ||| Sbjct 2396074 TCTTGTTCAATTTTAACAGCATCCTTAATAATTGATGTAAC---TCGTTCACAAGATGGT 2396130 Query 32636 ----ATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 |||||| ||||| ||||| |||||||| ||||| || |||| |||| Sbjct 2396131 TTTTGTACAAT--GTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 2396182 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||| ||| | || ||| ||| || ||||| ||||| || || | |||| Sbjct 2396287 CCTCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTT 2396346 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || || | ||||| ||| ||||||||| ||||||||||| ||||| | Sbjct 2396347 TTAACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 2396406 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 32859 ||| | | || | || ||| || ||||| |||||| ||| ||||||| | Sbjct 2396407 CAACCACACGTTCAGGAAAAGTGGCACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 32907 | || ||| ||||| |||| | || ||||||||||| | | ||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATAAAAAGT 2396514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTC--TTCT-TGAGACATAACTCCCATTTT 32371 |||||| ||| ||| | || ||||| | | || |||| | ||| |||||| ||| Sbjct 2395705 TTAAAATTCAGCATTAACAGTAAAATTACTTTCAATTCTATCTTGCATTACTCCCCATTT 2395764 Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAA-TTAGTTTTACCTTCTAATGATATATTTT 32430 ||| ||||| ||||| ||||| ||| || || || ||||||||||| || |||| || Sbjct 2395765 TTGATATTCTCCCACTTTTTTTTTCAAAGAAGTTTGTCTTACCTTCTAAAGAAATATGTT 2395824 Query 32431 CCATGAAATCGAATGGATT 32449 |||||||||| || ||||| Sbjct 2395825 CCATGAAATCAAACGGATT 2395843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633569064501600