Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7885 138 1e-27 seq2112 136 3e-27 seq182 136 3e-27 seq1955 131 1e-25 seq3153 125 6e-24 seq878 122 8e-23 >seq7885 Length=810 Score = 138 bits (152), Expect = 1e-27 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || |||||| | || || | ||||| || | || Sbjct 747 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACTATTACTCTGGAAGTTGAAGCTTCC 688 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| ||||||||||| ||||| || ||| Sbjct 687 GATACCATTGAA--AATGTAAAAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCCGAC 631 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || |||||||||||||||| ||| ||| | |||||| Sbjct 630 CAACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTAT 571 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||||||||||| || || ||| | || ||| Sbjct 570 AATATTCAAAAAGAATCAACCCTCCATCTCGTTCTA 535 Score = 129 bits (142), Expect = 5e-25 Identities = 172/234 (74%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||||||||| ||| | || || ||| | || || | ||||| || | ||| Sbjct 292 ATGCAAATATTTGTAAAAACTCTTACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 233 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || || | |||| ||| || || ||||| |||||||| || Sbjct 232 GATACAATTGAA--AATGTTAAAACTAAAATTCAA-GATAAGGAAGGTATTCCACCAGAT 176 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATT 25173 || ||| | | |||||||| || ||||| | ||||||| ||| |||| | || ||| Sbjct 175 CAGCAGAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGTCGTACACTTTCGG--ATT 118 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||||||||||||||| || ||||||||||| || | | ||||| |||| Sbjct 117 ATAATATTCAAAAAGAATCAACACTACATTTAGTACTGCGTTTGAGAGGTGGAA 64 Score = 102 bits (112), Expect = 7e-17 Identities = 155/215 (72%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || ||| ||||||| | || || || | || Sbjct 519 ATGCAAATTTTCGTTAAAACTCTTACGGGAAAA-CCATCACTCTGGAGGTTGAAGCTTCC 461 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | ||| | |||| ||| || || ||||| ||||| ||||| || Sbjct 460 GATACTATTGAAAATGTTAAGACTAAAATTCAA-GATAAGGAAGGTATTCCTCCTGATCA 402 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTAC 25175 |||| | | || ||||| || |||||||||||||||| ||| |||| | | ||||| Sbjct 401 ACAGAGACTGATCTTTGCAGGAAAACAATTAGAAGATGGTCGTACACTTTCG--GATTAT 344 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || ||| | || || Sbjct 343 AACATCCAGAAAGAATCAACTCTTCATCTTGTACT 309 >seq2112 Length=2858 Score = 136 bits (150), Expect = 3e-27 Identities = 156/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | || |||||| | || || | ||||| || | || Sbjct 164 AATGCAAATTTTCGTCAAGACTCTCACGGGTAAAACTATTACTCTTGAAGTTGAAGCTTC 223 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || ||||||||| ||| ||||| ||||| ||||||||||| Sbjct 224 CGATACAATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAGGAAGGTATTCCACCTGA 280 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || ||||| || |||||||||||||||| || || | |||||| Sbjct 281 CCAACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGACGTACACTTTCCGATTA 340 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||||| || || || Sbjct 341 TAATATTCAAAAAGAATCGACTCTTCA 367 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| |||| ||| ||||||||||| ||||| ||||| ||||| | | |||||||| Sbjct 16 AAGCCAAAATTCAA-GACAAAGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCT 74 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || |||||||| ||||||| || ||| | |||||| ||||||||||||||||| || Sbjct 75 GGAAAACAATTGGAAGATGGCCGTACTCTTTCCGATTATAATATTCAAAAAGAATCTACA 134 Query 25197 CTACAT 25202 || ||| Sbjct 135 CTTCAT 140 >seq182 Length=1849075 Score = 136 bits (150), Expect = 3e-27 Identities = 148/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| |||||||| || |||||||| |||||| | ||||| | ||||| || | Sbjct 123033 ACGATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCA 122974 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| || |||| || |||| ||| || |||||||| || |||||||| Sbjct 122973 TCAGATACTATAGAAAATGTGAAAGCTAAAATTCAG-GATAAAGAAGGAATACCACCTGA 122915 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || |||||||||| || || ||||||||||||| || ||| || || || Sbjct 122914 TCAACAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTGTCGGACTA 122855 Query 25175 CAATATTCAAAAAG 25188 ||||||||||||| Sbjct 122854 TAATATTCAAAAAG 122841 >seq1955 Length=5322578 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| | |||||| | ||||| || | || Sbjct 1861710 AATGCAAATCTTTGTCAAAACTCTTACTGGAAAAACTATCACACTTGAAGTTGAAGCTTC 1861651 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| ||||||||||| ||||| ||||||| Sbjct 1861650 AGACACAATAGAAAATGTAAAGGCTAAGATTCAA-GACAAAGAAGGAATTCCCCCTGACC 1861592 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||| || |||||||||||||||| | ||| | ||||| | Sbjct 1861591 AGCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGAAGAACTCTCTCAGATTATA 1861532 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| ||||| || || |||||||| | || || ||||||| Sbjct 1861531 ATATCCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTCGAGGAGG 1861483 Score = 114 bits (126), Expect = 1e-20 Identities = 152/208 (73%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| | ||||| | ||||| || | || Sbjct 1861256 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACTATCACTCTTGAAGTTGAAGCTTC 1861197 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| || | ||| || |||||||| ||||||||||| Sbjct 1861196 AGACACAATAGAA--AATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCACCTGA 1861140 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| |||||||| | ||||||| | ||| | ||||| Sbjct 1861139 TCAGCAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTTTCAGATTA 1861080 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||||||||| || || || ||| Sbjct 1861079 CAATATTCAAAAAGAGTCTACTCTTCAT 1861052 Score = 114 bits (126), Expect = 1e-20 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| |||| || | ||||| || | || Sbjct 1861481 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAAACCATTACTTTAGAAGTTGAAGCTTCG 1861422 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| || | ||| || |||||||| ||||| || || Sbjct 1861421 GACACAATAGAA--AATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCAGAT 1861365 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || ||||| ||||||||| | ||| | | |||| Sbjct 1861364 CAGCAACGATTGATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCAG--ATTAT 1861307 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| ||||||||||| || || ||||||||| | || || ||||||||| Sbjct 1861306 AATATCCAAAAAGAATCTACACTCCATTTAGTGTTGAGACTTCGAGGAGGAA 1861255 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || || | || ||| | ||||| || | || Sbjct 1860801 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860742 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || ||| | || |||| || | ||| || |||||||| ||||| ||||| Sbjct 1860741 GGATACAATAGAG--AATGTAAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCTGA 1860685 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | |||||||| ||||||||| | ||||||| | || | ||||| Sbjct 1860684 TCAGCAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTTTTAGATTA 1860625 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||| ||||||||||| || || ||||| || | || || | |||||| Sbjct 1860624 CAATATCCAAAAAGAATCTACACTGCATTTGGTATTGAGACTTCGGGGAGGA 1860573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || || | || ||| | ||||| || | || Sbjct 1861028 AATGCAGATCTTTGTTAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 1860969 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | ||| | || | ||| || || ||||| ||||| ||||||| Sbjct 1860968 GGATACAATAGAGAATGTAAAGGCTAAGATTCAA-GATAA-GAAGGAATTCCGCCTGACC 1860911 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| |||||||| | ||||||| | ||| | ||||| | Sbjct 1860910 AACAACGTTTGATTTTTGCTGGCAAACAGCTTGAAGATGGAAGAACTCTCTCAGATTATA 1860851 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| ||||| || || || ||| | || | | || ||||||||| Sbjct 1860850 ATATTCAGAAAGAGTCTACTCTTCATCTGGTATTGCGACTTCGAGGAGGAA 1860800 >seq3153 Length=1268 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| ||||||| | ||||| || | || Sbjct 969 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCA 1028 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| ||| | ||| |||||| || |||||||| |||||||| || ||| Sbjct 1029 GATACTATAGAGAATGTAAAGGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 1088 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || |||||| | ||||||| | || | ||||||||| Sbjct 1089 CAACGATTGATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAAT 1148 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||| || || |||||||| |||| || ||||||| Sbjct 1149 ATCCAAAAAGAATCTACACTCCATTTAGTATTAAGACTTCGAGGAGG 1195 >seq878 Length=1131996 Score = 122 bits (134), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| |||||| | || || | || || ||| | || Sbjct 558419 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 558478 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || ||||||||| ||| || || ||||| |||||||| || Sbjct 558479 GATACCATTGAA--AATGTAAAAGCAAAAATTCAA-GATAAGGAAGGAATTCCACCAGAT 558535 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | || ||||| || |||||| ||||||||| ||||| || ||||| Sbjct 558536 CAGCAAAGATTGATCTTTGCTGGAAAACAACTAGAAGATGGACGCACATTGTCTGATTAT 558595 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||| || || |||||||||| || | | ||||| |||| Sbjct 558596 AATATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTGAGAGGTGGAA 558647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433286035703990