Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2024 168 7e-37 seq1955 120 3e-22 seq917 118 1e-21 seq793 118 1e-21 seq600 116 4e-21 >seq2024 Length=8919894 Score = 168 bits (186), Expect = 7e-37 Identities = 149/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| ||||||| |||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 2396611 ATGTACGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 2396670 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || || || ||||||||| ||||| || || ||| Sbjct 2396671 AAACCATAGAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 2396730 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || ||||| |||||||||||||| || || | ||| |||||||||| Sbjct 2396731 TTCTCATTGACAATTCCATCAGATGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 2396790 Query 93542 TTCTCA 93547 || ||| Sbjct 2396791 TTTTCA 2396796 Score = 120 bits (132), Expect = 3e-22 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || || | ||||||||| ||||| | ||||| | || |||| ||| || Sbjct 2396289 TCATCTCTAGAAATAAGCTCATTGCTAAATGTAAGTCCTGGCATAAGACCTCTTTTTTTT 2396348 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || || | |||||||||||| ||| || |||||||| || || ||||| || Sbjct 2396349 AACCAGAAAATAGCGGCAAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 2396408 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTAC-TG-CTGATCCATTTTAAAGCCCAATCGG 93293 || | |||||| | |||| | || | || | || | ||||| ||||| ||||||| | Sbjct 2396409 ACCACACGTTCAGGAAAAGTGGC--ACTTTCATGATTTATCCAATTTAACGCCCAATGAG 2396466 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 ||||||| || ||| || | |||||||||| ||||||| Sbjct 2396467 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCATTAAATA 2396508 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| |||||||| |||||||| || |||||||| |||||||| |||||||||||||| | Sbjct 2396898 CTTTAGAAAGATCTACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTGTACATTT 2396957 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| || || | ||||||| ||||| | ||||| | | || || ||||| | || Sbjct 2396958 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 2397017 Query 93699 ACGGCTCTAGTTGTGGGTCAAA 93720 | ||||||| || ||| | ||| Sbjct 2397018 ATGGCTCTAATTCTGGATTAAA 2397039 >seq1955 Length=5322578 Score = 120 bits (132), Expect = 3e-22 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 432246 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 432187 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||| | || || Sbjct 432186 GTGGGTTCGAACCCCACACCTGGCAAACTTTTTTT 432152 >seq917 Length=2621782 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 299359 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 299418 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 299419 GTGGGTTCGAACCCCACACCTGGCAAA 299445 >seq793 Length=11668 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 9515 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 9574 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 9575 GTGGGTTCGAACCCCACACCTGGCAAA 9601 >seq600 Length=4716229 Score = 116 bits (128), Expect = 4e-21 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 127378 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 127437 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTTTGTT 126369 |||||||||||||| | ||||| | || || |||||| || Sbjct 127438 TTCGAACCCCACACTTAGCAAATATTTTTTTTTTATTTTTATT 127480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556805489801040