Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_008689.1 Length=44857 Score E Sequences producing significant alignments: (Bits) Value seq6626 104 7e-18 seq4744 91.5 4e-14 >seq6626 Length=1819 Score = 104 bits (114), Expect = 7e-18 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40996 AAATATGAAGAACAAAAATCGATTCTTAAAGATAGAAATAGCTTTTCTAAAACTGATCAT 41055 |||||||||||| | || || || |||| | | | ||||| || ||||| ||||| || Sbjct 888 AAATATGAAGAATACCAAGCGCTTTTTAAGGGTCGCAATAGTTTCTCTAAGACTGACCAC 947 Query 41056 GATGCAACTTTTATGAGAATGAAGGAAGACCATATGAAAAATGGCCAACTTAAGCCAGGA 41115 ||||| || |||||| | ||||||||||||| ||| || || || || ||||| || Sbjct 948 GATGCCACCTTTATGCGCATGAAGGAAGACCCGATGCTTAACGGGCAGCTAAAGCCGGGC 1007 Query 41116 TACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTCAAAAC 41175 |||||| | || | ||||| | ||| | |||| | |||| ||| | || ||| Sbjct 1008 TACAATCTGCAGGTTGCGACCAGCAATCAGTATGTTATTGATTATGCCCTGTATCCTAAC 1067 Query 41176 CCGACAGATACTAGAACTTT 41195 || || || || ||||| || Sbjct 1068 CCAACTGACACCAGAACCTT 1087 >seq4744 Length=1121 Score = 91.5 bits (100), Expect = 4e-14 Identities = 206/306 (67%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 4993 AACCAAAAATTGTATTTGCAGATGCAGTAGCTACTACTAA-GACATCAATTTTAGTTGGA 5051 |||| ||| | ||||||||||| |||| | | | | | |||| | || |||||||| Sbjct 493 AACCTAAAGCTCTATTTGCAGATACAGTTTCAGCAAGTGATGACA-CTATCTTAGTTGGT 551 Query 5052 GAGTTAGCAAAGATCATTAAACAAAACGGTGTAAACATCGGGCAACGCAGATTGTTTGAG 5111 || | || ||||| | ||| || |||||||| || || ||| || | ||| || Sbjct 552 GAACTTGCCAAGATTTTGAAAGGCAAAGGTGTAAATATTGGCCAAAATAGGCTTTTTAAG 611 Query 5112 TGGTTACGTCAAAACGGATTCCTTATTAAACGCAAGGGTGTGGATTATAACATGCCTACA 5171 ||| | ||| | || || | | || || || | ||| || || | || || Sbjct 612 TGGATGCGTGATAATGGCTATTTGATAAACCGGAGGGGCAGTGACCGCAATGTTCCGACT 671 Query 5172 CAGTATTCAATGGAACGTGAGTTATTCGAAATTAAAGAAACATCAATCACACATTCGGAC 5231 || | || |||||| | ||||| | |||||||||||| ||||| ||| | || Sbjct 672 CAAAAGTCTATGGAAATGGGACTATTC-AGATTAAAGAAACAGTAATCAATCATCCTGAT 730 Query 5232 GGTCACACATCAATTAGTAAGACGCCAAAAGTAACAGGCAAAGGACAACAATACTTTGTT 5291 ||| | || ||||| ||||||||||||||||| || ||||| || | || ||||| Sbjct 731 GGTAAGCCAAGTATTAGAAAGACGCCAAAAGTAACTGGTAAAGGCCAGCGCTATTTTGTG 790 Query 5292 AATAAG 5297 || ||| Sbjct 791 AACAAG 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143407266992588