Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1955 181 2e-40 seq2112 172 1e-37 seq3153 167 4e-36 seq7885 149 1e-30 seq878 141 2e-28 seq182 123 5e-23 seq74 87.8 3e-12 >seq1955 Length=5322578 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| | |||||| | || || || |||||||| || || |||||||| | Sbjct 1861709 TTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1861768 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| || |||||||| | || || || || || || | | |||||| || |||| Sbjct 1861769 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1861828 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| ||||| || ||| || ||||||| | ||| | Sbjct 1861829 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAA 1861888 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| ||||||||||||||||| || | ||||| || || ||||||||| Sbjct 1861889 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATT 1861938 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| | |||||| | || || || |||||||| || || |||||||| | Sbjct 1864349 TTCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1864408 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| || |||||||| | || || || || || || | | |||||| || |||| Sbjct 1864409 AGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTG 1864468 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| ||||| || ||| || ||||||| | ||| | Sbjct 1864469 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAA 1864528 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| ||||||||||||||||| || | ||||| || || ||||||||| Sbjct 1864529 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATT 1864578 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | |||||| || || || || || || |||||||| |||||||| ||| Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||||||||| || || || || || || | | ||| ||||| || ||| Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| ||||| || || || ||||||| | ||| ||| Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||| |||||||| || || || ||||| || || |||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| |||||||||| || || || ||||||||||| || || ||||| | Sbjct 1861027 TTCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTG 1861086 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || |||||||| | ||| || || || || || | | ||| || || |||| Sbjct 1861087 AAAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTG 1861146 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| || || || || || ||||||| | ||| | Sbjct 1861147 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAA 1861206 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | ||||| |||||||| ||||| || ||||| || || |||||| Sbjct 1861207 CTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 159 bits (176), Expect = 6e-34 Identities = 174/230 (76%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| |||||||||| || || || |||||||| || || |||||||| | Sbjct 1860800 TTCCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTG 1860859 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || || |||||||| | ||| || || || || || | | ||||||||| || | Sbjct 1860860 AGAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCG 1860919 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| ||||| || ||| || || || | | ||| | Sbjct 1860920 GAATTCCTTC-TTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAA 1860978 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | || || || ||||| || || || || || || ||||||||| Sbjct 1860979 CTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 158 bits (174), Expect = 2e-33 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | ||| || || || || || || ||||||||||| |||||||| | Sbjct 1861255 TTCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG 1861314 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| || |||||||||| ||| || || || || || | || ||| || || || | Sbjct 1861315 AGAGTT--CTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAG 1861372 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||||||||| || || || || || ||||| | | ||| | Sbjct 1861373 GAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAA 1861432 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || |||||||| || ||||| || ||||| || || ||||| Sbjct 1861433 CTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| ||||| | ||||||||| || || || || ||||||||||| || ||||| | Sbjct 1860573 TCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 1860632 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||||| || |||||||| | || || || || || || | || ||| || || || || Sbjct 1860633 AAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| ||||| || ||||||||||| || || || ||| || || || | | ||| || Sbjct 1860693 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAAC 1860752 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || || || ||||| || || || || || || ||||||||| Sbjct 1860753 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 >seq2112 Length=2858 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| | ||| || || || |||||||| || ||||||||||| Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||||| || || || || || || | ||| |||||||| |||||| Sbjct 331 AGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 272 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| ||||| || || || || || || | | ||| ||| Sbjct 271 ATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACT 212 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || ||||| |||||||| ||||||||||| || |||||| Sbjct 211 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 Score = 116 bits (128), Expect = 7e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| ||||| || | || || || || |||||||| || |||||||||| Sbjct 165 TTCCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGG 106 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| || || || || || || || | ||||||||| || || | Sbjct 105 AAAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAG 46 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 |||| ||||| ||||||||||| |||| ||| Sbjct 45 GAATACCTTCTTTGTCTTGAAT-TTTGGCTT 16 >seq3153 Length=1268 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | ||||| || || || || || ||||||||||| || ||||| ||| Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || |||||||| | || || || || || || | || |||||| || |||||| Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||| || || ||||| || ||| || || |||| | ||| ||| Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||||||||||| || ||||| || || || |||||||| || Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 966 >seq7885 Length=810 Score = 149 bits (164), Expect = 1e-30 Identities = 170/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||| | || || || || ||||| |||||||||||||| || Sbjct 294 CCACCACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAA 353 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||||| || || || || || || ||||| ||||| || || ||| Sbjct 354 AGTGTACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGA 413 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| || | ||| || || || || || | | ||| || Sbjct 414 ATACCTTCCTTATCTTGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACC 473 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||| ||||||||| || || || ||||| || ||||| Sbjct 474 TCCAGAGTGATGG-TTTTCCCGTAAGAGTTTTAACGAAAATTTGCAT 519 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || |||||||| || ||||||||||| Sbjct 521 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAA 580 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| || || || || || || | ||| ||||||||||| ||| Sbjct 581 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGA 640 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || || || || || ||||| || | | ||| ||| Sbjct 641 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 700 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || ||||| ||||| || || || || || || ||||| Sbjct 701 TCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 >seq878 Length=1131996 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| ||| || |||| || ||||||||||| || |||||||| || | ||| | ||| Sbjct 558633 CGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCA 558574 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||||| || || || || || || | |||||| || || |||||||| |||||||| Sbjct 558573 TCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTA 558514 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 |||||||| ||||| || || || ||||| |||| | || || |||| || || Sbjct 558513 TCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATT 558454 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 ||||| || || | || ||||| || |||||||| || Sbjct 558453 GTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGAT 558416 >seq182 Length=1849075 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| || ||||| || || | || | ||||||||||| ||||| || || || | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || | |||||| || ||||| || ||||| || || ||||| || || || || | Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || || |||| || ||||||||| | ||||| ||||| ||||| | || || || | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 68452 ATATCTGCATTATGCTAT 68469 |||||||||| || ||| Sbjct 123021 ATATCTGCATCGTGGTAT 123038 >seq74 Length=1704272 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| |||| || || || || || || |||||||| ||||||||||| |||||||| Sbjct 1126193 ACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAGAGTGTCCTACCATCTTCC 1126134 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 || || || || || || || | ||||||||| | |||||||| ||| Sbjct 1126133 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGACCAGGTGGAATTCCT 1126086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921530859855120