Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2812 104 2e-17 >seq2812 Length=11703 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || || | ||||||| ||| Sbjct 3679 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTCCACGATCTAATGAA 3738 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 3739 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3778 Score = 104 bits (114), Expect = 2e-17 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT--AAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || || | ||||||| ||| Sbjct 3679 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGTCCACGATCTAATGAA 3738 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 3739 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 3778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397023947732692