Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq182 172 1e-37 seq2112 168 2e-36 seq7885 154 3e-32 seq3153 140 8e-28 seq1955 132 1e-25 seq878 104 6e-17 >seq182 Length=1849075 Score = 172 bits (190), Expect = 1e-37 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| ||||||||||| | | || ||||| ||||||||||| ||||| || || | Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | ||||| |||||| | ||| ||||||||||||||||| ||||| |||||||| |||| Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 |||||| ||| | ||||||||| || ||||| || || || |||| ||| || || | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 288464 ATATCTGCATTATGTTAT 288481 |||||||||| || ||| Sbjct 123021 ATATCTGCATCGTGGTAT 123038 >seq2112 Length=2858 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | |||||| || |||| || ||||||||| |||||||| |||| Sbjct 391 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAA 332 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||||||||||||||| || ||||||| | |||||| | ||| Sbjct 331 AGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGA 272 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||| ||||| || ||||| || | |||| | ||| ||| Sbjct 271 ATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACT 212 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || || || |||||||||||||| || |||||| Sbjct 211 TCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 Score = 104 bits (114), Expect = 6e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| | || ||||||| || ||||||||| |||||||| |||| Sbjct 164 TCCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGA 105 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| ||||||||||| || || |||| | |||||| | || Sbjct 104 AAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGG 45 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 || |||||||| || || ||||| ||||| || ||||| || Sbjct 44 AATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAAT 3 >seq7885 Length=810 Score = 154 bits (170), Expect = 3e-32 Identities = 171/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| ||||||| || |||||| ||||| ||||| || | Sbjct 294 CCACCACGAAGACGAAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAA 353 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || |||||||||||||||||||| |||||||| | ||||||| | || Sbjct 354 AGTGTACGACCATCTTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGA 413 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| | || || ||||| |||| |||| | ||| || Sbjct 414 ATACCTTCCTTATCTTGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACC 473 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || ||||| || ||||| || ||||| Sbjct 474 TCCAGAGTGATGGTTTTCCC-GTAAGAGTTTTAACGAAAATTTGCAT 519 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || |||||||| | || ||||||||| |||||||| |||| Sbjct 521 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAA 580 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||||||||||||| || ||||||| | |||||| || Sbjct 581 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGA 640 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || ||||| ||||| || ||||| || | |||| | ||| ||| Sbjct 641 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 700 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || ||||| || || || || ||||| Sbjct 701 TCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 >seq3153 Length=1268 Score = 140 bits (154), Expect = 8e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | ||| | ||| | || ||||||||||||||| || || | | Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | |||||| || || ||||||| || |||||| ||| Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| |||||||| || || || || ||||||| ||| | ||| ||| Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| || || || || || || || || || |||||||| || Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCATGAT 966 >seq1955 Length=5322578 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | ||| | ||| | || ||| |||||||||||||| || | | Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| |||||||||||||| || || ||||||| ||| || || | || Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || || || || || || || |||||||| | || | ||| ||| Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || ||||| ||||| || || |||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 Score = 125 bits (138), Expect = 2e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| | ||| ||||||| || |||||||| ||||| || || | Sbjct 1861028 TCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGA 1861087 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| | ||||| || || || |||| ||| || ||| | ||| Sbjct 1861088 AAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGG 1861147 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || ||||| || |||||||| | || | ||| || Sbjct 1861148 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 1861207 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || || || || ||||| ||||| || || |||||| Sbjct 1861208 TTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | ||| | ||| | || ||||||||||||||| || || Sbjct 1860573 TCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAA 1860632 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| | |||||| || || || |||| || || ||| | || Sbjct 1860633 AAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 1860692 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || ||||| || || ||||| | ||| | ||| || Sbjct 1860693 AATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAAC 1860752 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || ||||| || || ||||| || || || ||||||||| Sbjct 1860753 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCATT 1860801 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | ||| ||||||| || ||||| || |||||||| || | Sbjct 1861710 TCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGA 1861769 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | || ||||| | |||||| || || || |||| ||| |||||| ||| Sbjct 1861770 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1861829 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || || || || || ||||| | || | ||| || Sbjct 1861830 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAAC 1861889 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || | |||||| || || ||||||||| Sbjct 1861890 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATT 1861938 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | ||| ||||||| || ||||| || |||||||| || | Sbjct 1864350 TCCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGA 1864409 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | || ||||| | |||||| || || || |||| ||| |||||| ||| Sbjct 1864410 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 1864469 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || || || || || ||||| | || | ||| || Sbjct 1864470 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAAC 1864529 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| || || || || | |||||| || || ||||||||| Sbjct 1864530 TTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATT 1864578 Score = 113 bits (124), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | || | ||| | || |||||||||||||||||| || | Sbjct 1861256 TCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTGA 1861315 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| | | ||| ||||||| ||||| || || ||||||| || || ||| ||||| Sbjct 1861316 GAG--TTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGA---TCTGG 1861370 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||||| || || || ||||| || |||||||| | || | ||| Sbjct 1861371 AGGAATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTC 1861430 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || || ||||| ||||| || || ||||| Sbjct 1861431 AACTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 >seq878 Length=1131996 Score = 104 bits (114), Expect = 6e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || || ||||| ||||||||||| || || |||| | ||||||| || || Sbjct 558810 GTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATA 558751 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||||||||| ||||| ||||| || ||||| |||| ||| | ||| ||||| Sbjct 558750 CCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCT 558691 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || ||||| || || || || || ||||| || || |||||| Sbjct 558690 AAAGTAATCGTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCATT 558646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179534301597388