Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2656 100 3e-16 seq621 100 3e-16 seq1453 98.7 1e-15 seq2325 96.9 4e-15 seq2374 91.5 2e-13 seq7885 89.7 6e-13 seq1561 87.8 2e-12 seq2845 86.0 7e-12 seq1055 86.0 7e-12 >seq2656 Length=1073256 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 575248 TTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 575189 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 575188 CTATACTACCGAGGA 575174 >seq621 Length=3205890 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 56997 GAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 3162353 GAAAAATAATCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3162294 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 3162293 TACTAACCACTATACTACCGAGGA 3162270 >seq1453 Length=2861619 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1712041 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1712100 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 1712101 TACTACCGAGGATT 1712114 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1711131 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1711190 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 1711191 TACTAACGAGGATT 1711204 >seq2325 Length=1829695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1555526 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 1555585 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 1555586 ATACTACCGAGGA 1555598 >seq2374 Length=1634490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 56998 AAAAAT---TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| ||||||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 841167 AAAAATATATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 841108 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 841107 TACTAACCACTATACTAACGAGGA 841084 >seq7885 Length=810 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| ||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 125 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| |||||||| || || | || |||||| || | ||| Sbjct 126 AGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGA 185 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGC-GTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| | | ||| |||| |||| | | | | | || || | ||| || Sbjct 186 ATACCTTCCTTAT-CTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || || ||||| || || || || |||||||| |||||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 >seq1561 Length=5220439 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 23944 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 24003 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 24004 TAACCACTATACTATCGAGGA 24024 >seq2845 Length=97856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 77077 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 77136 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 77137 TACTATCGAGGA 77148 >seq1055 Length=2524637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2116589 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2116530 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2116529 TACTATCGAGGA 2116518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543158845388640