Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1955 127 2e-24 seq3153 118 1e-21 seq7885 116 4e-21 seq2112 111 2e-19 seq878 104 2e-17 seq182 86.0 6e-12 >seq1955 Length=5322578 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | |||||||||| || || ||||| ||||| || ||||||| | Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||| || ||||| ||| |||| | || || || || || ||| Sbjct 1861771 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1861830 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| || || ||||||| ||| | ||| || || || ||| Sbjct 1861831 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1861890 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 |||| || | ||| || || || ||||| || || || || |||||||| || Sbjct 1861891 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTTAT 1861943 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | |||||||||| || || ||||| ||||| || ||||||| | Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||| || ||||| ||| |||| | || || || || || ||| Sbjct 1864411 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1864470 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| || || ||||||| ||| | ||| || || || ||| Sbjct 1864471 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1864530 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 |||| || | ||| || || || ||||| || || || || |||||||| || Sbjct 1864531 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTTAT 1864583 Score = 123 bits (136), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||| ||| | || ||||||||||| || || ||||||| | Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTGAG 1861316 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||| || || ||| | || | || ||||| || |||||| Sbjct 1861317 A--GTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| || || |||||| || | ||| || || || ||| Sbjct 1861375 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACT 1861434 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | ||| ||||| || | |||||| || || |||||||| Sbjct 1861435 TCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || ||||||||||| |||||||||| | || | | |||||| Sbjct 1861047 ACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCTTCA 1861106 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| ||||| ||| |||| | || ||||| || || |||||||||||||| ||||| Sbjct 1861107 AGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTATCTTGA 1861166 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || |||||| || | ||| || || || ||||| | ||| | || || Sbjct 1861167 ATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGATAGTTTTT 1861226 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | |||||| || || ||||||||| Sbjct 1861227 CCAGTGAGAGTTTTGACAAAGATTTGCATT 1861256 Score = 118 bits (130), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || || ||||| ||||| || ||||||| || || | | |||||| Sbjct 1860820 ACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGTTCTTCCATCTTCA 1860879 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| ||||| ||| |||| | || || ||||| || ||||||||||| || ||||| Sbjct 1860880 AGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCCTTC-TTATCTTGA 1860938 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||||||| ||| | |||||| || || ||||| | || | ||||| Sbjct 1860939 ATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGTCTTT 1860998 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | |||||| || || || |||||| Sbjct 1860999 CCAGTAAGAGTTTTAACAAAGATCTGCATT 1861028 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| || ||||||||| | || | | |||||||| || ||||| Sbjct 1860604 GTAGATTCTTTTTGGATATTGTAATCTAAAAGTGTTCTTCCATCTTCAAGTTGTTTGCCA 1860663 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 1860664 GCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTT 1860723 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||| || || ||||| | || | ||||| || || | |||| Sbjct 1860724 ACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTT 1860783 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 1860784 TTAACAAAGATCTGCATT 1860801 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | |||| ||| | || ||||| ||||| || || ||||||| Sbjct 1861482 ACCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 1861541 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| | || || || ||| | || | || |||||||| || || Sbjct 1861542 GAGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGG 1861601 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| ||||| || || ||||||| || | ||| || || || || Sbjct 1861602 AATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAAC 1861661 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || || || | |||||| || || ||||||||| Sbjct 1861662 TTCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCATT 1861710 >seq3153 Length=1268 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | |||| ||| | || ||||||||||| || |||||||||| Sbjct 1196 ACCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGA 1137 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | |||||||| || || || ||| | || | || || || || || || Sbjct 1136 GAGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGG 1077 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| ||||| ||||| ||||||| ||| | ||||| || || || Sbjct 1076 AATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAAC 1017 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||| || || || | ||||| || ||||| ||||| Sbjct 1016 TTCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq7885 Length=810 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || |||||||||||||| || ||||| | | || || | ||| Sbjct 81 AGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCT 140 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| |||| | | |||||| || || ||||| ||||| || ||| Sbjct 141 TCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCT 200 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| || ||| || | ||||||| || || ||||||| ||| | || Sbjct 201 TGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACTTCTAAAGTAATTGTT 260 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||||||| || |||||||| Sbjct 261 TTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||| | || |||||||||||||| || ||||| | Sbjct 520 ACCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGA 579 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || || || ||| | || | | ||| ||||||||||| Sbjct 580 AAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGG 639 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| |||||| || | ||||| || || || Sbjct 640 AATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAAC 699 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | || || || || | |||||| || ||||||||||| Sbjct 700 TTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 102 bits (112), Expect = 8e-17 Identities = 151/213 (71%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || |||||||| || ||||| ||||| | | || || | || Sbjct 308 AAGTACAAGATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATC 367 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || ||| | || || | ||| || || |||||||| ||||| || || Sbjct 368 TTCTAATTGTTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATC 427 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||||| || || || || | ||| | ||| Sbjct 428 TTGAATTTTAGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGT 487 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||| | | |||||| |||||||||||||| Sbjct 488 TTTCCCG-TAAGAGTTTTAACGAAAATTTGCAT 519 >seq2112 Length=2858 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||||||||||||||| || ||||| | | || || | || Sbjct 377 AAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATC 318 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || ||| | || | | ||| ||||| || ||||| ||||| || || Sbjct 317 TTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTC 258 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | |||||| || || ||||| | ||| | || Sbjct 257 TTGAATTTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGT 198 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || ||||||||||||||| Sbjct 197 TTTACCCGTGAGAGTCTTGACGAAAATTTGCATT 164 >seq878 Length=1131996 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || || ||||||||||| || ||||| | | ||||| | ||| Sbjct 558630 AGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGACAATGTGCGTCCATCT 558571 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || ||| | || | | ||||| || || ||||||||||| || ||| Sbjct 558570 TCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTATCT 558511 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| |||||| || | ||||| ||| || || || | ||||| || Sbjct 558510 TGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTT 558451 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| ||||| || || || ||||| Sbjct 558450 TTACCTGTCAATGTTTTGACAAAGATCTGCAT 558419 >seq182 Length=1849075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| || || || | | || || | ||||| | ||||| || ||| ||| Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACC 64372 | || || || || || || || ||||||||||| || || | |||| ||||| ||| Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTG-AATTTTAGCTTTCACATTT 122959 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || ||||| | ||| | || || || ||||||||||| || Sbjct 122960 TCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACA 123019 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 123020 AATATCTGCAT 123030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499595172780240