Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7885 168 5e-37 seq1955 156 3e-33 seq3153 149 4e-31 seq2112 141 7e-29 seq878 116 3e-21 seq182 100 2e-16 >seq7885 Length=810 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || ||| | ||| ||||| || |||||||| || || |||||| Sbjct 521 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAA 580 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||||||||| ||||| | ||||| | |||||||||| ||| Sbjct 581 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGA 640 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||||||| ||||||| |||| || |||||| | ||| || Sbjct 641 ATACCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACT 700 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| |||||||| || |||||||| ||||||||||||||| Sbjct 701 TCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCATA 748 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | |||||||| || || || |||||||| || || ||||| Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGAA 125 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| ||||| | ||||| | ||| || || |||| Sbjct 126 AGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGGA 185 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || |||||| |||| ||| |||| || ||||| | ||| || Sbjct 186 ATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAACT 245 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 246 TCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCATA 293 Score = 114 bits (126), Expect = 9e-21 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || ||||| || ||||| ||||| || | | | ||||||||||| Sbjct 317 ATGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGTGTACGACCATCTTCTAATTG 376 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || || | |||| | |||||| || ||||| |||||||| || |||||| Sbjct 377 TTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTT 436 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| |||| ||||||||| | ||| || || | || |||||||| || || Sbjct 437 AGTCTTAACATTTTCAATAGTATCGGAAGCTTCAACCTCCAGAGTGATGGTTTT-CCCGT 495 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 |||||||| || |||||||||||| Sbjct 496 AAGAGTTTTAACGAAAATTTGCATA 520 >seq1955 Length=5322578 Score = 156 bits (172), Expect = 3e-33 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || |||||||| || ||||| |||||||| || || ||||| || Sbjct 1861257 CCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATC--TG 1861314 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||| ||||| ||||| | ||||| || || || || ||| Sbjct 1861315 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 1861374 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || ||||||| ||||||| || || | ||| || Sbjct 1861375 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACT 1861434 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||||||||| || || |||||||| ||||| ||||||||| Sbjct 1861435 TCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCATA 1861482 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || |||||||| || ||||| || ||||| || || ||||| | Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | |||||||||||||| ||||| | |||||||| || ||||| ||| Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| || |||||| ||||||| || || | ||| || Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| || || |||||||| ||||| |||||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || |||| |||||| ||||| ||||| || || || ||||| | Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||||||||| | |||||||| ||||| || |||| Sbjct 1861771 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1861830 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || |||||| | ||||| || || | ||| || Sbjct 1861831 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1861890 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||||||| |||||||| ||||| | ||| || ||||| || ||||| ||| Sbjct 1861891 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTT 1861941 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | ||| || |||| |||||| ||||| ||||| || || || ||||| | Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||||||||| | |||||||| ||||| || |||| Sbjct 1864411 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 1864470 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || |||||| | ||||| || || | ||| || Sbjct 1864471 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACT 1864530 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||||||| |||||||| ||||| | ||| || ||||| || ||||| ||| Sbjct 1864531 TCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCATTTTT 1864581 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | |||||| ||||| |||||||| || |||||||| ||| |||| | ||| Sbjct 1861044 AATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCT 1861103 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||||||||| | |||||||| || || || |||||||||||| || || Sbjct 1861104 TCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCTTCTTTATCT 1861163 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || ||||||| ||||||| || || | ||| || || | || || ||| Sbjct 1861164 TGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGAGTGATAGTT 1861223 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| |||||||| Sbjct 1861224 TTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | ||| || || ||||| || ||||| |||||||| || |||||||| Sbjct 1860574 CCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTAAA 1860633 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||||||||| | ||||| || || || || ||| Sbjct 1860634 AGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 1860693 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||| || ||||||| | ||||| ||||| | ||| || Sbjct 1860694 ATTCCTTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACT 1860753 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || || || |||||||| ||||| || ||||| Sbjct 1860754 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 122 bits (134), Expect = 6e-23 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | || || || | |||||| ||||| ||||| || || || ||||| | Sbjct 1860802 CCTCCTCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1860861 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | ||||||||||| | |||||||| |||||||| ||| Sbjct 1860862 AGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGA 1860921 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||| ||| || ||| || |||||| | ||||| ||||| | ||| || Sbjct 1860922 ATTCCTT-CTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACT 1860980 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || || || |||||||| ||||| || ||||| Sbjct 1860981 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1861027 >seq3153 Length=1268 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | |||||| |||||||| || ||||| |||||||| || |||||||| | Sbjct 1195 CCTCCTCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAG 1136 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | |||||| ||||| | ||||| || ||||| || |||| Sbjct 1135 AGTGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGA 1076 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||| |||||| | ||||||||||| | ||| || Sbjct 1075 ATTCCTTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 1016 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || ||||| |||||||| ||||| Sbjct 1015 TCAAGAGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 969 >seq2112 Length=2858 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| || || |||||| || | | | |||||||||||| Sbjct 367 TGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGT 308 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||||||||| |||||| ||||||||||| |||||| Sbjct 307 TTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTT 248 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||||| |||| || |||||| | ||| || || | ||||| |||||||| || Sbjct 247 GCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTG 188 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || ||||||||||| Sbjct 187 AGAGTCTTGACGAAAATTTGCAT 165 >seq878 Length=1131996 Score = 116 bits (128), Expect = 3e-21 Identities = 182/257 (71%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | |||||||| | || || |||||||| || || ||||| | Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCA--G 558588 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||||| |||||| ||||| | ||||| | || || || || Sbjct 558587 ACAATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTG 558528 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || |||||| ||||||| |||| || ||||| || | Sbjct 558527 GAATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAA 558468 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA----TATTTG-- 15181 | || | || || ||||||||||||| ||||| ||||| || |||| ||| || Sbjct 558467 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGATTATCTGGA 558408 Query 15182 AAATAAATTTTTTAATA 15198 ||| ||||| ||||||| Sbjct 558407 AAAAAAATTATTTAATA 558391 Score = 113 bits (124), Expect = 3e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||| ||||| | ||||| | |||||| ||| ||||| ||||| || Sbjct 558801 TCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGTTGATCGGGAGGAATACCTTCTTTA 558742 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| |||| |||||||| | ||| || ||||| ||||| Sbjct 558741 TCCTGAATTTTAGCTTTAACATTTTCAATAGTATCTGAAGCTTCAACTTCTAAAGTAATC 558682 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || ||||| |||||||||||||| Sbjct 558681 GTTTTTCCAGTGAGCGTTTTGACAAAAATTTGCAT 558647 >seq182 Length=1849075 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||||||||| || ||||| | || | ||| ||||| || ||| |||||||| || Sbjct 122876 TCTTCTAATTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTA 122935 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || |||||| ||| ||| ||||||||||||| |||||| || | || || Sbjct 122936 TCCTGAATTTTAGCTTTCACATTTTCTATAGTATCTGATGCTTCTACTTCAAGAGTGATA 122995 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||| |||||| ||||| || ||||| Sbjct 122996 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 123030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357357389488610