Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq878 129 6e-25 seq7885 116 4e-21 seq1955 114 1e-20 seq2112 93.3 4e-14 seq3153 91.5 1e-13 >seq878 Length=1131996 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || |||| || ||||||| || ||||||||||||||||| ||||| Sbjct 558646 TCCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGA 558587 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| ||||| ||||||||||| ||||||||| |||||||| || || Sbjct 558586 CAATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGG 558527 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| | | ||| ||| ||| || | | ||| | ||| || | ||| | Sbjct 558526 AATTCCTTCCTTAT-CTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAA 558468 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||||| || |||| ||||| ||||| ||||||||| Sbjct 558467 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 558418 >seq7885 Length=810 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | || || |||||||||||||| |||||| Sbjct 521 CCACCACGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAA 580 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||||||||| ||||||||| ||| || |||||||| Sbjct 581 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGA 640 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| ||| || || | | ||| | ||| || | | || || Sbjct 641 ATACCTTCTTTGT-CTTGAATTTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAAC 699 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| |||||||| ||||| Sbjct 700 TTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 747 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || |||| || ||||||| || || |||||||||||||| ||||| Sbjct 65 TCCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCCGA 124 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || |||||||| ||||| | ||||||| ||||||||| || || Sbjct 125 AAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTGG 184 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||||| || | | ||| | || || | | || || Sbjct 185 AATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAAC 244 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||||||||| || ||||| Sbjct 245 TTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 >seq1955 Length=5322578 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || |||||| ||||| | ||||| |||||||| ||||| ||||| Sbjct 1861256 TCCTCCTCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTGA 1861315 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| ||||||||||| ||||| |||||||||| |||||||| ||||| Sbjct 1861316 GA--GTTCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGG 1861373 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| | | || || | | ||| | ||||||| | || | Sbjct 1861374 AATTCCTTCTTTAT-CTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAA 1861432 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | |||||||| || |||||||| ||||| || ||||| Sbjct 1861433 CTTCTAAAGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861481 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||||| |||| ||| | |||||||||||||||||||||||||| Sbjct 1861028 TCCTCCCCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGA 1861087 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || |||||||| ||||| | ||||| || |||||||| || || Sbjct 1861088 AAGAGTTCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGG 1861147 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| | | || || | | ||| | ||||| | | || | Sbjct 1861148 AATTCCTTCTTTAT-CTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAA 1861206 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || |||||||| ||||| || ||||| Sbjct 1861207 CTTCAAGAGTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 1861255 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| || || | || ||| |||||||| | ||||| |||||||| ||||||||||| Sbjct 1860572 CTCCTCCCCGAAGTCTCAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCTA 1860631 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || | ||| || || ||||| ||||| | |||||||| |||||||| |||| Sbjct 1860632 AAAGTGTTCTTCCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAG 1860691 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 | || || || || | | ||| | | || || | | || | || |||| | || Sbjct 1860692 GAATTCCTTCTTTAT-CTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCA 1860750 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | || || || || |||||||| ||||| |||||||| Sbjct 1860751 ACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 >seq2112 Length=2858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||||||||| |||||| | || || ||| |||| ||||||||| Sbjct 361 GTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCTTCTAATTGTTTTCCA 302 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || ||||||||| ||| || || || || || || ||||||| | ||| ||| ||| || Sbjct 301 GCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGT-CTTGAATTTTTGCTTT 243 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | || || | | || ||||| | || | ||||| || || ||||| Sbjct 242 TACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGT 183 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 182 CTTGACGAAAATTTGCAT 165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||||| || | ||| | ||||| |||||||||||||| |||||| Sbjct 164 TCCACCACGAAGTCGCAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTATAATCGGA 105 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | ||||||||||| | ||||||| || ||||| ||||| Sbjct 104 AAGAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTTTGTTGATCAGGAGG 45 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || || || |||| | ||| ||| |||| Sbjct 44 AATACCTTCTTTGT-CTTGAATTTTGGCTT 16 >seq3153 Length=1268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || || ||||| | ||||| |||||||| ||||||||||| | || | ||| Sbjct 1180 AATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGTTCTTCCATCT 1121 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 || || ||||| ||||| |||||||||| || ||||| || || || || || || || Sbjct 1120 TCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCT 1061 Query 127022 GTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTT 127081 |||||| ||| | | || | || || | | || ||||| | || | ||| Sbjct 1060 TGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGTT 1001 Query 127082 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || || ||||| ||||||||||||||| Sbjct 1000 TTTCCAGTTAGGGTTTTAACAAAAATCTGCATG 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475453570883040