Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1429 87.8 2e-12 >seq1429 Length=9113309 Score = 87.8 bits (96), Expect = 2e-12 Identities = 234/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG-GGATAAAAATTCCT 116330 || || || | |||||| | ||| ||||||| || ||| | |||||| |||| Sbjct 7666674 CCTATAGGTCTATGTCTAAAATTTGACTTTCTCGCT-TCTGGAATAGGATAATAATTGAC 7666616 Query 116331 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA-TTTCATGAAGCTTTTCGT 116389 |||||||| | | ||||| || |||| ||||| | ||||| |||| |||| Sbjct 7666615 ATCGATAATTTTGTCGAGATTACAAGTAACAATTTTTGTTACTTTCA-GAAGTTTTTGAA 7666557 Query 116390 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 116449 ||||||| | || | | ||| ||| || || || || ||||| || | ||||| Sbjct 7666556 AATCAAATGTTTGATTATTGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 7666497 Query 116450 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 116509 |||||| ||||| | | |||| | || ||| ||||| ||||| ||||| Sbjct 7666496 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 7666437 Query 116510 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG-TTACACGCATCCTTGTAGAGCATA 116568 | || || || | || | |||||||| |||| | || || ||| || || |||||| Sbjct 7666436 TTATTGTTCCTATATTTTGATGATTTGA-TTTGCGATTGCAATGATCTTTATAAAGCATA 7666378 Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATC 116618 ||||| || || || || ||| || | |||||||| |||||| ||| Sbjct 7666377 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATC 7666328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613446263397360