Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq1563 154 3e-33 seq2131 98.7 2e-16 >seq1563 Length=10698 Score = 154 bits (170), Expect = 3e-33 Identities = 496/757 (66%), Gaps = 32/757 (4%) Strand=Plus/Plus Query 1675 TGAAAGATATCGAAAATGCAGTTATTCCTGAGTTTGACATACGTGGTAAGCGAGTTTATG 1734 || ||||| | |||||||| ||| | ||| || | || ||| | ||| || Sbjct 2950 TGCAAGATGTAGAAAATGCCGTTGATGATGATTTCAAAATTGACGGTCGTCAAGTATACA 3009 Query 1735 TAGGATTGGATGCATCAATGTTCAGCGATAATACAGCCATTGGCTTCGTCTATCCATACG 1794 | || |||||| |||||||| || |||||||| ||||| || || |||||||| Sbjct 3010 TCGGCTTGGATTATTCAATGTTTTCGGACAATACAGCGATTGGTTTTGTTTATCCATATC 3069 Query 1795 TTGGTGAAGATGGAAGTCAAAAATGGCATATCGAACAGCACAGTTTCATTCCTTGGCAGC 1854 |||||| || | | ||||||||| | || |||||||| ||||| ||||| | Sbjct 3070 AAAATGAAGAAGGGCAGCCACGATGGCATATTGCTCAACACAGTTTTATTCCGTGGCAAC 3129 Query 1855 AAGCAGGTTCGCTTGAGGCTAAGATGGAGCAGGACGGTGTCAATTATCGAGACTTGGAAG 1914 |||| || |||||||||||||| |||| || ||| | ||||| || || Sbjct 3130 AAGCCGGATCGCTTGAGGCTAAAGAAAAGCAAGATGGTATTGTTTATCATGAGTT----T 3185 Query 1915 CCAAGGGCTTTTGTACGATTACAAGCCATCCACAAGGGCTTATTAACCCAGAGGAAGTGT 1974 || | |||||||| || || ||| | |||| ||||||| ||||| |||| | Sbjct 3186 CC--TGAGTTTTGTACAATCACTGCACATGAAAAAGGAATTATTAATCCAGAACAAGTTT 3243 Query 1975 ATCGCTGGTTTATAGATTATGTTGAAGATAATCAGCTTGATGTCGTTTTCTTCGGCTATG 2034 || ||| || |||| ||||||||||| | | | | ||| ||||||| || |||| Sbjct 3244 ATAAATGGCTTTTAGACTATGTTGAAGAACACAATTTAAAGGTCATTTTCTTTGGATATG 3303 Query 2035 AC-------GCTATGATGACTGATAAAATAATA--AAAAGTCTTGAAT-CTAATACAAAT 2084 || || | || | | | |||| || |||| ||| ||| | |||||| | Sbjct 3304 ACCGTTTTGGCAGTTATCAGGTAAAGAATATTACTGAAAG-CTTAAATGCCAATACAGGT 3362 Query 2085 TTCCCACTCATGCCAATAAGACAACGTACAAGTGAGCTAAAAGACCCTACAAAATTCCTT 2144 | ||| | | ||| |||| | ||||| ||||| | ||||| ||||| | Sbjct 3363 GGTTAATTCAAGAC-ATAGCACAAAGGACAAGCGAGCTTGCCAATCCTACTAAATTTTTG 3421 Query 2145 CA--AACGCTAT-TTATCGAAGGCAATATCACTCGCTTGGATGATGAGATTATGCGTAAA 2201 || || ||| | || | || || || || || || | ||| |||| | ||| Sbjct 3422 CAAGAAAGCTTTGCTACC---GGGAAAATTACCCGGTTCAACGATCCGATTTTAGAAAAA 3478 Query 2202 GCCTTGATAAATGCTGTGATTAAAGAGGATAACATCGGCATTCAAGTAGACAA-AATGAA 2260 || ||| | |||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 3479 GCATTGCTTAATGCTTCTATTAAAGAAGATAAAATCGGGATACAAGTTGACAAGGATAAA 3538 Query 2261 GTCAACCTATAAGATTGACGTTGTAGATGCCCTTATCGATGCGTTTTATGATGGCATGTA 2320 | | ||| || ||||| || || ||||| | || ||||| | ||| | || ||| | Sbjct 3539 GCTACTCTA-AAAATTGATGTGGTTGATGCATTAATTGATGCAATGTATCAAGGGATGAA 3597 Query 2321 TGCATTTGAAGATTACGCTATTACCAAC---AACCCAACTTGGAAAGTTGAACACATGAG 2377 |||||| | || | |||| |||| || | ||| |||| |||| |||| Sbjct 3598 CCATTTTGAAAAGTATGGAATTATCAACGATAAATCGACT---GAAGTAGAACGTATGAC 3654 Query 2378 CCAAGAGGCAGTTTTAGCATGGCTAAAAAACCCAGAA 2414 ||||| ||| |||||||| | |||| || ||| Sbjct 3655 GCAAGAACAGGTTCTAGCATGGTTTGAAAATCCTGAA 3691 Score = 140 bits (154), Expect = 7e-29 Identities = 524/823 (64%), Gaps = 12/823 (1%) Strand=Plus/Plus Query 4807 TGGTTCTGATGCAGGTTTGACTATTCCTCAAGATATTCGCACAGCTATCAATACATTGGT 4866 || |||||| || || |||||||||| ||| | | || |||||| |||| | || Sbjct 6102 TGATTCTGAAGCTGGACTGACTATTCCAGTTGATGTACAGACTGCTATCCATACTCTAGT 6161 Query 4867 TCGTCAATACGATTCATTGCAAGAGTATGTAAATGTTGAGAACGTAACTACTCTTACTGG 4926 | ||||| ||||| || | ||||||||||| | || ||||| | ||| Sbjct 6162 AAGACAATATTCGTCATTAGAAACTTTAGTAAATGTTGAAAGTGTGTCTACTGCTCATGG 6221 Query 4927 TTCACGTGTTTATGAAAAATGGACTGATATTACAGGTCTTGCTAATATTGATGATGAAGC 4986 ||| | |||||||||||| | ||||||||| ||| ||| | ||||||||| Sbjct 6222 TTCTAGAGTTTATGAAAAACTAGCAGATATTACACCATTTGTTAACCTGGATGATGAAAA 6281 Query 4987 AGGTAAAANNNNNNNNNNNNNNNNNCCAAAACTTTCTCTTATCAAATACACTATCAAGCG 5046 || | ||| || || | |||| || || | | ||| | || Sbjct 6282 AGCTCAAATTGGTGATATTGATGATCCTAAGTTAACTCTGATTAAGTTTGCGATCCATCG 6341 Query 5047 CTATGCTGGTATCTCAACAGTTACTAACAGCTTGCTTGCTGACTCTGCTGAAAATATCCT 5106 || ||||| || | || |||||||| | | | ||||| | || |||||||| || Sbjct 6342 TTACGCTGGCATTACTACCGTTACTAATACACTTTTGGCTGATACGGCAGAAAATATTCT 6401 Query 5107 TGCATGGTTGTCTGGTTGGATTGCTAAAAAAGTTGTGGTTACTCGTAACAAGGCAATCTT 5166 || |||||| ||| || || | ||| || |||||||| | || || | Sbjct 6402 TGGCTGGTTGCAACAATGGGCAGCACGCAAGGATGTTGTGACTCGTAATCAAGCTATTCT 6461 Query 5167 GGGTGTTGTTGACAAACTCCCAACTAAACCAACATTGACTAAATGGGACGATATTATTGA 5226 || |||| | | || | ||| |||| || || | ||||| | || ||||||| || Sbjct 6462 GGCTGTTATGGGCACAGCACCAGCTAAGCCTACTATTACTAACTTTGATGATATTAAGGA 6521 Query 5227 CCTTGAAGCTAAAG---TTGACCCAGCAATCAAACAAACTTCATTCTTCTTAACTAACAC 5283 ||| || ||| |||| |||||||| | ||||||| || | |||||| Sbjct 6522 CCTGCAAAATAATACGCTTGATCCAGCAATTATCGCAACTTCAAGCTATGTTACTAACCA 6581 Query 5284 TTCAGGGTTTACTGCACTTAAAAAAGTTAAAAACGCTTTGGGTGACTACCTCATGGAACG 5343 || || |||| || || ||| | ||| | || ||| || | || ||| Sbjct 6582 ATCTGGTTTTAATGTTCTATCTAAAATGAAAGATGCAGATGGTCGTTATTTAATTCAACC 6641 Query 5344 TGATGTAA--AATCTCCAACAGGGTACTCA-ATCGATGGTTTCGCAGTTAAAGAAATTTC 5400 | |||||| |||| || | || | || | ||| |||||| ||| || Sbjct 6642 TAATGTAACTAATCCTGAA---GTTAAAGAGATTGGTGGACATGCAGTTCAAGTTATCGG 6698 Query 5401 TGATCGCTGGCTTCCTAACGCCTCATCAGGAGTTATGCCGCTTTATTTTGGTGACTTGAA 5460 |||| ||| | || | | ||| | | | |||||||| || |||||| | || Sbjct 6699 TGATAAGTGGTTACCAGATGTTTCAGGATCACAT---CCGCTTTACTTCGGTGACCTAAA 6755 Query 5461 ACAAGCAGTAACATTGTTTGACCGTCAACACTTGTCACTTCTTTCAACAAACATTGGTGG 5520 |||| | || || | |||||||||| |||| || | ||||||||||||| || Sbjct 6756 GCAAGGTATTACTTTATATGACCGTCAAAGAATGTCTGTTACTCCAACAAACATTGGAGG 6815 Query 5521 TGGAGCATTTGAAACTGACACTACTAAAGTACGTGTTATTGACCGTTTTGATGTAGTAGC 5580 |||||||||||||||||| || ||||| | || ||||||| || ||||| || | | Sbjct 6816 TGGAGCATTTGAAACTGATACAACTAAGATCCGCTTTATTGATCGGTTTGACGTTGAATT 6875 Query 5581 AACTGATACAGAAGCATTTGTGCCAGCATCATTTAAAGCTATT 5623 || |||| | ||||||| | || |||||||||| |||| Sbjct 6876 AATTGATGATGGTGCATTTGCAGCTGCTTCATTTAAAGATATT 6918 >seq2131 Length=5454 Score = 98.7 bits (108), Expect = 2e-16 Identities = 225/328 (69%), Gaps = 22/328 (7%) Strand=Plus/Plus Query 9329 CAACAAACCATGAATGCTACTTGGTTGACCTTAACGGGTAATGCCGAATATGGTaaaaaa 9388 ||||| || |||||||| || ||| | ||| | || || ||||| | | ||||| | Sbjct 540 CAACAGACAATGAATGCGACATGGCTAACCCTTACTGGAAATGCTGGTAAGGGTAAGTCA 599 Query 9389 aTGGTCGACATGACCAACCAAATGGCGCAAGCCGCTGCT---AACTCGACTGAAATGGTT 9445 ||||| | || | | ||||| ||| || ||| ||||| |||| ||||||| Sbjct 600 ATGGTTAAGCAGATTGATGATATGGC---AGCTGCAGCTCAAAACTCAACTGCAATGGTT 656 Query 9446 GATCGTATGAACCAAAAATTTTATGCAGTCACTCACAACATCGACTTAACTAAACAGCAA 9505 || | | | |||||||| |||||| ||| || || ||| || | | | | | || Sbjct 657 GACAATCTTAGTCAAAAATTCTATGCAATCAA-CA-AAGATC--CTAATCAGACCGGTAA 712 Query 9506 A-----CACAAGCTATCTTGACTTTGCAAGACGCTTTTGGGCAAACCGATGCAGCAG-TT 9559 || || | | |||| | ||||| || |||||| ||||||||| | ||| || Sbjct 713 TTTGGTCA-AATCGGTGCTGACCCTTCAAGATGCCTTTGGGAAAACCGATG-ATCAGGTT 770 Query 9560 GAAAACTTTAGTGTGCA--ATGGTCACAAATGATTGCGAACGGCAAGGTTTCAGGTCAAG 9617 ||||||||| || ||| |||| |||||||| || || ||||| || || | |||| Sbjct 771 GAAAACTTTGGTACGCAGTTTGGT--CAAATGATGGCCAATGGCAAAGTGTCTGCACAAG 828 Query 9618 ACATGTTGTCAATTATCAACGTCTTCCC 9645 ||||| |||| || |||||||||| || Sbjct 829 ACATGATGTCTTTTGTCAACGTCTTTCC 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111490278923888