Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1955 125 2e-23 seq182 113 1e-19 seq7885 104 6e-17 seq2112 93.3 1e-13 seq3153 84.2 5e-11 >seq1955 Length=5322578 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||||| || || |||||||||| || || || | | ||| Sbjct 1861488 TCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGAGT 1861547 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| | || || || || ||||| | ||| |||||||| || |||||| Sbjct 1861548 TCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGAATTCC 1861607 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || ||| | ||||||| | ||| || || | Sbjct 1861608 TTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 1861667 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||| ||||| Sbjct 1861668 TGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTG 1861706 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || || ||||| ||||| ||||| | ||||| || | | ||| Sbjct 1861035 CGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTTTGAATATTGTAATCTGAAAGAGTT 1861094 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| ||||| || || || || || | ||| ||||| || || ||||||| Sbjct 1861095 CTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGCTGATCAGGTGGAATTCCT 1861154 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || || ||| | ||||||| | ||| || || | Sbjct 1861155 TCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGA 1861214 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| ||||| ||||| Sbjct 1861215 GTGATAGTTTTTCCAGTGAGAGTTTTGACAAAGATTTG 1861252 Score = 118 bits (130), Expect = 2e-21 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||||| || || || ||||||| || || || | | ||| Sbjct 1861262 TCGAAGTCTCAACACTAAATGGAGTGTAGATTCTTTTTGGATATTATAATCTG--AGAGT 1861319 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| || || || ||||| | || ||||| || ||| |||||| Sbjct 1861320 TCTTCCATCTTCTAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATTCC 1861379 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || ||| | ||||| | | ||| || || || Sbjct 1861380 TTCTTTATCTTGAATCTTAGCTTTTACATTTTCTATTGTGTCCGAAGCTTCAACTTCTAA 1861439 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| ||||| ||||| Sbjct 1861440 AGTAATGGTTTTGCCAGTGAGAGTTTTGACAAAGATTTG 1861478 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || || || ||||| ||||| || || | || || || | | ||| Sbjct 1860807 TCGAAGTCGCAATACCAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGAGT 1860866 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| || || || || || | ||| || ||||| || |||||| Sbjct 1860867 TCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATCAAACGTTGTTGGTCAGGCGGAATTCC 1860926 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | || || | | ||| || || | Sbjct 1860927 TTCT-TATCTTGAATCTTAGCCTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAG 1860985 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| ||||| || || Sbjct 1860986 TGTAATAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTG 1861024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| ||||| || || | || || || | | || Sbjct 1861716 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 1861775 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || || || || || || || | ||| || || || || |||||| Sbjct 1861776 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCC 1861835 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | ||||||| | ||| || || || Sbjct 1861836 TTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAA 1861895 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || | ||| || ||||| || || |||||| Sbjct 1861896 GGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTG---CATTTT 1861940 Score = 89.7 bits (98), Expect = 1e-12 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| ||||| || || | || || || | | || Sbjct 1864356 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 1864415 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || || || || || || || | ||| || || || || |||||| Sbjct 1864416 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCC 1864475 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | ||||||| | ||| || || || Sbjct 1864476 TTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAA 1864535 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || | ||| || ||||| || || |||||| Sbjct 1864536 GGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTG---CATTTT 1864580 >seq182 Length=1849075 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || ||||| | |||||| | ||||||||| | |||||||| || || || Sbjct 122843 TTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATA 122902 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT-CACGGATTC 199560 ||||| || || || || ||||||||| |||||||| ||| |||| ||| ||| Sbjct 122903 AGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTTTC 122961 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || |||||||| | |||||||||||| Sbjct 122962 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 123021 Query 199621 AATTTG 199626 || || Sbjct 123022 TATCTG 123027 >seq7885 Length=810 Score = 104 bits (114), Expect = 6e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || ||||| || || || ||||| | || || || | | ||| Sbjct 527 CGAAGTCGTAGAACGAGATGGAGGGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTA 586 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | || ||||| || ||||| | | ||| ||||| ||| ||| ||| Sbjct 587 CGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGAGGAATACCT 646 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| ||| |||| || ||| | ||| || | | ||| || |||| Sbjct 647 TCTTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATGGTATCGGAAGCTTCAACTTCCAG 705 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| |||||||| ||||||||||| Sbjct 706 AGTAATAGTTTTACCCGTAAGAGTTTTAACAAAAATTTG 744 >seq2112 Length=2858 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||| || ||||| | || || || | | || | ||||||| Sbjct 376 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAATCGGAAAGTGTACGTCCATCT 317 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || ||||| || ||||| | | ||| ||||| || ||| ||||| || Sbjct 316 TCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGTGGAATACCTTCCTTGTCT 257 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||||| || ||| | || || | | ||| || || | || || || Sbjct 256 TGAAT-TTTTGCTTTTACATTTTCAATTGTATCGGAAGCTTCAACTTCAAGAGTAATAGT 198 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || || |||||||| Sbjct 197 TTTACCCGTGAGAGTCTTGACGAAAATTTG 168 >seq3153 Length=1268 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||| | || | ||||| || || || ||||||| ||||| || | | || Sbjct 1190 TCGAAGTCTTAATACTAAATGGAGTGTAGATTCTTTTTGGATATTGTAATCTGAGAGTGT 1131 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || || || || ||||| | || || || || || |||||| Sbjct 1130 TCTTCCATCTTCAAGTTGTTTACCAGCAAAGATCAATCGTTGTTGATCTGGTGGAATTCC 1071 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || || || ||| || || | || |||| | ||| || || | Sbjct 1070 TTCTTTATCTTGGATTTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAG 1011 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| |||||||| || Sbjct 1010 AGTGATGGTTTTTCCAGTTAGGGTTTTAACAAAAATCTG 972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178801576202382