Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq878 123 2e-23 seq7885 105 5e-18 seq2112 105 5e-18 seq182 100 2e-16 seq1955 86.0 4e-12 >seq878 Length=1131996 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||| ||||| || || |||||||| ||||||||||| | | Sbjct 558645 CCACCTCTCAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAC 558586 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || |||| |||| || | |||||| || |||| || || | |||||||| | || Sbjct 558585 AATGTGCGTCCATCTTCTAGTTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 558526 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || |||||| ||| | | | | || |||| | || || Sbjct 558525 ATTCCTTCCTTATCTTGAATTTTTGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 558466 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||| ||||||||||| || || ||||| || |||||||||||| Sbjct 558465 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 558418 >seq7885 Length=810 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||||||| ||||| | || ||||||||| ||||||||||| | Sbjct 66 CCACCTCTCAAACGCAGTACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATC--CG 123 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| || | ||||| || ||||||| || | ||||||||| | | Sbjct 124 AAAGTGTACGACCATCTTCGAGCTGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGTG 183 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||| || || ||||| ||||| | | | ||| || | ||| | Sbjct 184 GAATACCTTCCTTATCTTGAATTTTAGTTTTAACATTTTCAATTGTATCAGAAGCTTCAA 243 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||||||||||||| || || | ||||||||| || || ||||| Sbjct 244 CTTCTAAAGTAATTGTTTTTCCAGTAAGAGTTTTTACAAATATTTGCAT 292 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||||||||||| | | || |||| || |||||||| || |||| Sbjct 556 TTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAA 615 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | ||| || || | || | ||||||||||| ||||| ||| | | Sbjct 616 GATCAATCTCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGAATTTTGGCTTTTACATT 675 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | ||| || |||| |||||| ||||||||||| | |||||| || Sbjct 676 TTCAATGGTATCGGAAGCTTCAACTTCCAGAGTAATAGTTTTACCCGTAAGAGTTTTAAC 735 Query 39708 GAAGATCTGCAT 39719 || || ||||| Sbjct 736 AAAAATTTGCAT 747 >seq2112 Length=2858 Score = 105 bits (116), Expect = 5e-18 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||||||| || ||||| | ||| ||||| | || | ||| ||||||||| |||||| Sbjct 400 AATCATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTA 341 Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601 ||||||| ||| | ||| |||| || |||||||| || |||| || || | ||| | Sbjct 340 TAATCGG--AAAGTGTACGTCCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTT 283 Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 | || | || | ||||| ||||| |||||| ||| | | | | ||| || | Sbjct 282 GGTCAGGTGGAATACCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGG 223 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||| ||||||||||| | ||| || ||||| || ||||| Sbjct 222 AAGCTTCAACTTCAAGAGTAATAGTTTTACCCGTGAGAGTCTTGACGAAAATTTGCAT 165 >seq182 Length=1849075 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| |||||||| || | |||| ||| |||| || ||||| || || |||||| Sbjct 122841 CTTTTTGAATATTATAGTCCGACAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 122900 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| || ||||| | |||| |||||||| || ||||| ||| | | Sbjct 122901 TAAGACGTTGTTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 122960 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 ||| || |||| ||| || || | ||| || ||||||||||| |||||||| || | Sbjct 122961 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 123020 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 123021 ATATCTGCAT 123030 >seq1955 Length=5322578 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||| ||||| | || ||| ||||| ||||||||||| | Sbjct 1861483 CCTCCTCGAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 1861542 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || |||||||| || |||| || ||||| ||||| || | ||| Sbjct 1861543 AGAGTTCTTCCATCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGGGGA 1861602 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || || | | ||| |||||||| ||| || Sbjct 1861603 ATTCCTTCTTTGTCTTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 1861662 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || | |||||| || ||||| ||||| Sbjct 1861663 TCAAGTGTGATAGTTTTTCCAGTAAGAGTTTTGACAAAGATTTGCAT 1861709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC--- 39563 || ||||||||||| || ||||||||| ||||| ||||| ||| | |||| Sbjct 1860588 CAATACCAAATGCAGTGTAGATTCTTTTTGGATATTGTAATCT----AAAAGTGTTCTTC 1860643 Query 39564 -ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 ||| || | |||||| || ||||||| || || |||||||| | || | ||||||| Sbjct 1860644 CATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTT 1860703 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 | || || || ||| | || ||| ||| || | ||| || || | |||| Sbjct 1860704 TATCTTGAATCTTAGCTTTTACATTCTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAA 1860763 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || | |||||| || ||||||||||| Sbjct 1860764 TAGTCTTTCCAGTAAGAGTTTTAACAAAGATCTGCAT 1860800 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||| | ||| | ||| ||||| || ||||||||||| | Sbjct 1861711 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1861770 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| ||| || | |||||| || ||||||| ||||| || ||||| | Sbjct 1861771 A----GTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGG 1861826 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||||| || || || || | || ||| |||||||| ||| Sbjct 1861827 TGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTC 1861886 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || |||||||| || || ||||||||||| Sbjct 1861887 AACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1861937 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||| | ||| | ||| ||||| || ||||||||||| | Sbjct 1864351 CCCCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 1864410 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| ||| || | |||||| || ||||||| ||||| || ||||| | Sbjct 1864411 A----GTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGG 1864466 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||||| || || || || | || ||| |||||||| ||| Sbjct 1864467 TGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATTGTGTCTGAAGCTTC 1864526 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || |||||||| || || ||||||||||| Sbjct 1864527 AACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 1864577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347335960076618