Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5476 109 7e-19 >seq5476 Length=1777 Score = 109 bits (120), Expect = 7e-19 Identities = 293/441 (66%), Gaps = 28/441 (6%) Strand=Plus/Minus Query 15825 GCGTGAACACCCAAGATCTTCTCGCGTCCCCGAACACTTGGGAG-AGCTACTTGGATCTT 15883 |||||||| | || || || ||||| |||||| | |||| | | || || || Sbjct 550 GCGTGAACCCGTAAAATAGCTTCACGTCCGCGAACA-TCCGGAGTACCAACCAAGACTTT 492 Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 || ||||| ||||| || ||||| | || ||| | | ||| || || ||||| Sbjct 491 CCGGTCAAAACGACCAGGACGAAGCAAAGCTGGATCCAATACATCGGACCGGTTAGTTGC 432 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAA-----AAGC 15998 ||| || |||| || |||| | | || ||||||||||| | |||| || Sbjct 431 GGCAATAACAATAACACCTTCATTGCCCTCGAAACCATCCAT---TTTCAACTAACAACT 375 Query 15999 TGGTTAATAGTTTGTTCCCGTTCATCATT--------CGCTGGCA-TACCACCAGCACTG 16049 ||||| | || ||||| |||||||| || |||||||| | | |||| || Sbjct 374 TGGTTTAAGGTCTGTTCACGTTCATCGTTACCACCACCGCTGGCATTGCTACCACGACGA 315 Query 16050 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGA 16109 || || | |||||||| ||||| || |||| || | |||| ||||| | Sbjct 314 CG------ACCGATTGCATCAATTTCATCGATAAAGATAATACTTGGTGCATTTTTCTTA 261 Query 16110 GCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 16169 || | | || | ||| |||||||| |||| || ||||| |||||||| || |||||| Sbjct 260 GC-ATTGGTAATAAATCACGTACACGACTGGCACCAACACCGACAAACATTTCTACAAAG 202 Query 16170 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 16228 | || | ||| |||| || || || ||||| | |||||| |||| || || || || Sbjct 201 TCTGAACCAGAA-ATTGAGAAAAATGGTACATTGGCTTCACCAGCAACTGCCCGCGCAAG 143 Query 16229 AAGAGTCTTACCCGTACCTGG 16249 | |||||||| ||||| || Sbjct 142 TAAGGTCTTACCAGTACCCGG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620680744761120